Citations

Assorted images from other laboratories created using Reconstruct

Veins and vessels in fetal mouse liver (PDF).
Khan JA, Mendelson A, Kunisaki Y, Birbrair A, Kou Y, Arnal-Estapé A, Pinho S, Ciero P, et al. (2016) Fetal liver hematopoietic stem cell niches associate with portal vessels. Science, 351(6269):176-180.

Molar and mandible in human (PDF).
Park M-K, Jung W, Bae J-H, Kwak H-H (2016) Anatomical and radiographic study of the mandibular retromolar canal. Journal of Dental Sciences.

Ant brain (PDF).
Seid MA, Junge E (2016) Social isolation and brain development in the ant Camponotus floridanus. The Science of Nature, 103:42.

Mandibular gland of parasitoid wasp (PDF).
Stökl J, Herzner G (2016) Morphology and ultrastructure of the allomone and sex-pheromone producing mandibular gland of the parasitoid wasp Leptopilina heterotoma (Hymenoptera: Figitidae). Arthropod Structure & Development, 45(4):333–340.

Olfactory bulb in rat (PDF).
Bourne JN, Schoppa NE (2016) Three-dimensional synaptic analyses of mitral cell and external tufted cell dendrites in rat olfactory bulb glomeruli. J. Comp. Neurol.

Effect of bone degeneration on hearing (PDF).
Bloch SL, Sørensen MS (2016) The role of connectivity and stochastic osteocyte behavior in the distribution of perilabyrinthine bone degeneration. A Monte Carlo based simulation study. Hearing Research, 335:1–8.

Clavicle bone of human fetus (PDF).
Baumgart M, Wiśniewski M, Grzonkowska M, et al. (2016) Morphometric study of the two fused primary ossification centers of the clavicle in the human fetus. Surgical and Radiologic Anatomy, 38(8):937–945.

Sea lily (PDF).

Amemiya S, Omori A, Tsurugaya T, Hibino T, Yamaguchi M, Kuraishi R, Kiyomoto M, Minokawa T (2016) Early stalked stages in ontogeny of the living isocrinid sea lily Metacrinus rotundus. Acta Zoologica (Stockholm), 97:102–116.

3D reconstruction of mitochondria in mouse dendrites (7MB PDF).
Traka M, Millen KJ, Collins D, Elbaz B, Kidd GJ, Gomez CM, Popko B (2013) WDR81 is necessary for purkinje and photoreceptor cell survival. The Journal of Neuroscience, 33(16):6834-44.

3D reconstruction of mouse neuromuscular junction (7MB PDF).
Smith IW, Mikesh M, Il Lee Y, Thompson WJ (2013) Terminal Schwann Cells Participate in the Competition Underlying Neuromuscular Synapse Elimination. The Journal of Neuroscience, 33(45):17724-17736.

3D reconstruction of presynaptic vesicles (1MB PDF).
Ostroff LE, Cain CK, Jindal N, Dar N, Ledoux JE (2012) Stability of presynaptic vesicle pools and changes in synapse morphology in the amygdala following fear learning in adult rats. The Journal of Comparative Neurology, 520(2):295-314.

3D reconstruction of honeybee medial calyx (6MB PDF).
Groh C, Lu Z, Meinertzhagen IA, Rossler W (2012) Age-related plasticity in the synaptic ultrastructure of neurons in the mushroom body calyx of the adult honeybee Apis mellifera. The Journal of Comparative Neurology, 520(15): 3509-3527.

3D reconstruction of perivascular astroglial sheath (800KB PDF).
Mathiisen TM, Lehre KP, Danbolt NC, and Ottersen OP (2010) The perivascular astroglial sheath provides a complete covering of the brain microvessels. Glia, 58(9): 1094-1103.

3D reconstruction of numerous dendritic spines (500KB PDF).
Katz Y, Menon V, Nicholson DA, Geinisman Y, Kath WL, and Spruston N (2009) Synapse Distribution Suggests a Two-Stage Model of Dendritic Integration in CA1 Pyramidal Neurons. Neuron, 63(2):171-177.

3D reconstruction of a sea urchin sensory neuron (1MB PDF).
Bishop CD and Hall BK (2009) Sniffing Out New Data and Hypotheses on the Form, Function, and Evolution of the Echinopluteus Post-Oral Vibratile Lobe. The Biological Bulletin, 216:307-321.

3D reconstruction of synapse and vesicles (1.3MB PDF).
Branco T, Staras K, Darcy KJ, and Goda Y (2008) Local Dendritic Activity Sets Release Probability at Hippocampal Synapses. Neuron, 59(3):475-485.

3D reconstruction of an Ivy cell bouton and dendrite (2.1MB PDF).
Fuentealba P and Begum R (2008) Ivy Cells: A Population of Nitric-Oxide-Producing, Slow-Spiking GABAergic Neurons and Their Involvement in Hippocampal Network Activity. Neuron, 57(6):917-929.

3D reconstruction of mitochondrial sheath (300KB PDF).
Ho H-C, Wey S (2007) Three dimensional rendering of the mitochondrial sheath morphogenesis during mouse spermiogenesis. Microscopy Research and Technique, 70(8):719-723.

3D reconstruction of mitochondrial cristae (1MB PDF).
Frezza C, Cipolat S, de Brito OM, Micaroni M, Beznoussenko GV, Rudka T, Bartoli D, Polishuck RS, Danial NN, De Strooper B, Scorrano L (2006) OPA1 Controls Apoptotic Cristae Remodeling Independently from Mitochondrial Fusion. Cell, 126(1):177-189.

3D reconstruction of axons (750KB PDF).
Bishop DL, Misgeld T, Walsh MK, Gan W-B, and Lichtman JW (2004) Axon Branch Removal at Developing Synapses by Axosome Shedding. Neuron, 44(4):651-661.

3D reconstruction of dendritic spines (780KB PDF).
Segev I, London M (2000) Untangling Dendrites with Quantitative Models.
Science, 290(5492):744-750.

3D reconstruction of multiple spine synapses (400KB PDF).
Toni N, Buchs P-A, Nikonenko I, Bron CR, Muller D (1999) LTP promotes formation of multiple spine synapses between a single axon terminal and a dendrite. Nature, 402:421-425.

3D reconstruction of nerve fasciculation pattern (1MB PDF).
Lu J, Tapia JC, White OL, Lichtman JW (2009) The Interscutularis Muscle Connectome. PLoS Biology, 7(2):e1000032.

3D reconstruction of fish fossil braincase (4MB PDF).
Hamel M-H, Poplin C (2008) The Braincase Anatomy of Lawrenciella schaefferi, Actinopterygian from the Upper Carboniferous of Kansas (USA). Journal of Vertebrate Paleontology, 28(4):989-1006.

3D reconstruction of mouse Peyer's patch (2MB PDF).
Ma B, Wang L, von Wasielewski R, Lindenmaier W, and Dittmar KEJ (2008) Serial sectioning and three-dimensional reconstruction of mouse Peyer's patch. Micron, 39(7):967-975.

3D reconstruction of two calyces of Held (700KB PDF).
Hoffpauir BK (2007) Serial sectioning and electron microscopy of large tissue volumes for 3D analysis and reconstruction: a case study of the calyx of Held. Nature Protocols, 2:9-22.

3D reconstruction of infected tree bark (700KB PDF).
Parke JL, Oh E, Voelker S, Hansen EM, Buckles G, Lachenbruch B (2007) Phytophthora ramorum Colonizes Tanoak Xylem and Is Associated with Reduced Stem Water Transport. Phytopathology, 97(12):1558-1567.

3D reconstruction of mite olfactory lobes (300KB PDF).
van Wijk M, Wadman WJ, Sabelis MW (2006) Morphology of the olfactory system in the predatory mite Phytoseiulus persimilis. Experimental and Applied Acarology, 40(3-4):217-229.

3D reconstruction of moth olfactory receptor neurons (2MB PDF).
Lee S-G, Vickers NJ, Baker TC (2006) Glomerular Targets of Heliothis subflexa Male Olfactory Receptor Neurons Housed within Long Trichoid Sensilla. Chemical Senses, 31(9):821-834.

3D reconstruction of Al-Si alloy (600KB PDF).
Dinnis CM, Dahle AK, Taylor JA (2005) Three-dimensional analysis of eutectic grains in hypoeutectic Al–Si alloys. Materials Science and Engineering: A, 392(1-2):440-448.

Journal Articles

List of peer-reviewed articles citing SynapseWeb or Reconstruct

2019-2022

Alimohamadi, H., Bell, M. K., Halpain, S., & Rangamani, P. (2021). Mechanical principles governing the shapes of dendritic spines. Frontiers in Physiology, 836.
Anaya, E. F. (2020). Age-related alterations on ultrastructure and gene expression profile of the female blood-brain barrier. Open University (United Kingdom).
Ashaber, M., Zalányi, L., Pálfi, E., Stuber, I., Kovács, T., Roe, A. W., ... & Négyessy, L. (2020). Synaptic organization of cortico‐cortical communication in primates. European Journal of Neuroscience, 52(9), 4037-4056.
Aten, S., Kiyoshi, C. M., Arzola, E. P., Patterson, J. A., Taylor, A. T., Du, Y., ... & Zhou, M. (2022). Ultrastructural view of astrocyte arborization, astrocyte-astrocyte and astrocyte-synapse contacts, intracellular vesicle-like structures, and mitochondrial network. Progress in Neurobiology, 213, 102264.
Aziz, W., Kraev, I., Mizuno, K., Kirby, A., Fang, T., Rupawala, H., ... & Giese, K. P. (2019). Multi-input synapses, but not LTP-strengthened synapses, correlate with hippocampal memory storage in aged mice. Current Biology, 29(21), 3600-3610.
Bai, G., & Zhang, M. (2022). Inhibitory postsynaptic density from the lens of phase separation. Oxford Open Neuroscience, 1.
Ball, J. M., Chen, S., & Li, W. (2021). Cone mitochondria act as microlenses to enhance light delivery and confer Stiles-Crawford-like direction sensitivity. bioRxiv.
Ball, J. M., Chen, S., & Li, W. (2022). Mitochondria in cone photoreceptors act as microlenses to enhance photon delivery and confer directional sensitivity to light. Science advances, 8(9), eabn2070.
Baltan, S., Jawaid, S. S., Chomyk, A. M., Kidd, G. J., Chen, J., Battapady, H. D., ... & Trapp, B. D. (2021). Neuronal hibernation following hippocampal demyelination. Acta neuropathologica communications, 9(1), 1-15.
Banks, S. M., Medeiros, A. T., McQuillan, M., Busch, D. J., Ibarraran-Viniegra, A. S., Sousa, R., ... & Morgan, J. R. (2020). Hsc70 ameliorates the vesicle recycling defects caused by excess α-synuclein at synapses. Eneuro, 7(1).
Batalla-Covello, J., Abidi, W., Ngai, H. W., Hyde, C., Machado, D., Majid, A. A., ... & Mooney, R. (2021). Allogeneic Human Neural Stem Cells for Improved Therapeutic Delivery to Peritoneal Ovarian Cancer.
Baudier, K. M., Bennett, M. M., Barrett, M., Cossio, F. J., Wu, R. D., O'Donnell, S., ... & Fewell, J. H. (2022). Soldier neural architecture is temporarily modality specialized but poorly predicted by repertoire size in the stingless bee Tetragonisca angustula. Journal of Comparative Neurology, 530(4), 672-682.
Bednarz, K. (2019). Changes in synaptic connectivity during ultradian growth hormone secretion are correlated with changes in astrocytic coverage of neurons as seen in super-resolution and electron microscopy. McGill University (Canada).
Beeson, A. L. S. (2022). Estrous Cycle Impacts on Dendritic Spine Plasticity in Rat Nucleus Accumbens Core, Shell, and Caudate-putamen.
Beguelini, M. R., Santiago, C. S., Morielle-Versute, E., & Taboga, S. R. (2020). Morphophysiological variations of the female reproductive organs of the vespertilionid bat Myotis nigricans during its different reproductive phases. Theriogenology, 158, 121-137.
Berg, D. A., Su, Y., Jimenez-Cyrus, D., Patel, A., Huang, N., Morizet, D., ... & Bond, A. M. (2019). A common embryonic origin of stem cells drives developmental and adult neurogenesis. Cell, 177(3), 654-668.
Bhandari, P., Vandael, D., Fernández-Fernández, D., Fritzius, T., Kleindienst, D., Önal, C., ... & Koppensteiner, P. (2021). GABAB receptor auxiliary subunits modulate Cav2. 3-mediated release from medial habenula terminals. Elife, 10, e68274.
Calì, C., Kare, K., Agus, M., Castillo, M. F. V., Boges, D., Hadwiger, M., & Magistretti, P. (2019). A method for 3D reconstruction and virtual reality analysis of glial and neuronal cells. JoVE (Journal of Visualized Experiments), (151), e59444.
Carrier, M., Robert, M. È., González Ibáñez, F., Desjardins, M., & Tremblay, M. È. (2020). Imaging the neuroimmune dynamics across space and time. Frontiers in Neuroscience, 14, 903.
Chaichim, C., Tomanic, T., Stefen, H., Paric, E., Gamaroff, L., Suchowerska, A. K., ... & Power, J. (2021). Overexpression of Tropomyosin Isoform Tpm3. 1 Does Not Alter Synaptic Function in Hippocampal Neurons. International Journal of Molecular Sciences, 22(17), 9303.
Chun Chung, G. H., Gissen, P., Stefan, C. J., & Burden, J. J. (2022). Three-dimensional Characterization of Interorganelle Contact Sites in Hepatocytes using Serial Section Electron Microscopy. Journal of Visualized Experiments, 184.
Clarkson, C., Smeal, R. M., Hasenoehrl, M. G., White, J. A., Rubio, M. E., & Wilcox, K. S. (2020). Ultrastructural and functional changes at the tripartite synapse during epileptogenesis in a model of temporal lobe epilepsy. Experimental neurology, 326, 113196.
Courson, J. A., Landry, P. T., Do, T., Spehlmann, E., Lafontant, P. J., Patel, N., ... & Burns, A. R. (2021). Serial Block-Face Scanning Electron Microscopy (SBF-SEM) of Biological Tissue Samples. JoVE (Journal of Visualized Experiments), (169), e62045.
da Silva Gomes, L., da Silva Lima, D., Costa, J. R., da Silva, C. R. B., Marques, M. R., de Azevedo Brito, P. V., ... & Dos Santos, F. C. A. (2020). Neonatal exposure to aluminum chloride disrupts branching morphogenesis and hormonal signaling of the ventral male prostate and female prostate of gerbils. Journal of Trace Elements in Medicine and Biology, 61, 126559.
Dalkara, T. (2019). Pericytes: a novel target to improve success of recanalization therapies. Stroke, 50(10), 2985-2991.
DelGiorno, K. E., Chung, C. Y., Vavinskaya, V., Maurer, H. C., Novak, S. W., Lytle, N. K., ... & Wahl, G. M. (2020). Tuft cells inhibit pancreatic tumorigenesis in mice by producing prostaglandin D2. Gastroenterology, 159(5), 1866-1881.
Dembitskaya, Y., Gavrilov, N., Kraev, I., Doronin, M., Tang, Y., Li, L., & Semyanov, A. (2021). Attenuation of the extracellular matrix increases the number of synapses but suppresses synaptic plasticity through upregulation of SK channels. Cell Calcium, 96, 102406.
Dembitskaya, Y., Gavrilov, N., Kraev, I., Doronin, M., Tyurikova, O., & Semyanov, A. (2020). Attenuation of the extracellular matrix increases the number of synapses but suppresses synaptic plasticity. bioRxiv.
Djurisic, M. (2020). Minimizing Hypoxia in Hippocampal Slices from Adult and Aging Mice. JoVE (Journal of Visualized Experiments), (161), e61377.
Drakhlis, L., Biswanath, S., Farr, C. M., Lupanow, V., Teske, J., Ritzenhoff, K., ... & Zweigerdt, R. (2021). Human heart-forming organoids recapitulate early heart and foregut development. Nature Biotechnology, 39(6), 737-746.
Drawitsch, F. P. (2020). Correlative three-dimensional light-and electron microscopy for long-range connectomics (Doctoral dissertation, [Sl: sn]).
Dudink, I., White, T. A., Ardalan, M., Mallard, C., Ballerin, G., Creed, S. J., ... & Miller, S. L. (2022). An optimized and detailed step-by-step protocol for the analysis of neuronal morphology in golgi-stained fetal sheep brain. Developmental Neuroscience, 1-19.
Endo, M., Maruoka, H., & Okabe, S. (2021). Advanced Technologies for Local Neural Circuits in the Cerebral Cortex. Frontiers in Neuroanatomy, 15, 757499.
Esmaili, Z., Naseh, M., Karimi, F., & Moosavi, M. (2022). A stereological study reveals nanoscale-alumina induces cognitive dysfunction in mice related to hippocampal structural changes. NeuroToxicology.
Farahani, R. A., Farah, M. C., Zhu, X. Y., Tang, H., Saadiq, I. M., Lerman, L. O., & Eirin, A. (2020). Metabolic syndrome impairs 3D mitochondrial structure, dynamics, and function in swine mesenchymal stem cells. Stem Cell Reviews and Reports, 16(5), 933-945.
Fehr, T. (2021). Long-Term Effects of Early-Life Anesthesia Exposures on Neuronal Ultrastructure in Rhesus Macaques (Doctoral dissertation, Icahn School of Medicine at Mount Sinai).
Fehr, T., Janssen, W. G., Park, J., & Baxter, M. G. (2022). Neonatal exposures to sevoflurane in rhesus monkeys alter synaptic ultrastructure in later life. bioRxiv.
Fitzgerald, M. L., Mackie, K., & Pickel, V. M. (2019). Ultrastructural localization of cannabinoid CB1 and mGluR5 receptors in the prefrontal cortex and amygdala. Journal of Comparative Neurology, 527(16), 2730-2741.
Foissner, I., & Hoeftberger, M. (2019). Chemical fixation, immunofluorescence, and immunogold labeling of electron microscopical sections. In Plant Cell Morphogenesis (pp. 43-62). Humana, New York, NY.
Frías-Anaya, E., Gromnicova, R., Kraev, I., Rogachevsky, V., Male, D. K., Crea, F., ... & Romero, I. A. (2021). Age-related ultrastructural neurovascular changes in the female mouse cortex and hippocampus. Neurobiology of Aging, 101, 273-284.
Fritzius, T., Kleindienst, D., Onal, C., Montanaro, J., Gassmann, M., Jonas, P., ... & Koppensteiner, P. GABAB receptor auxiliary subunits modulate Cav2. 3-mediated release from medial habenula terminals.
Gentry, N. (2021). Genetic and neurobiological factors mitigating the negative consequences of sleep deficits. University of California, San Francisco.
Gentry, N. W., McMahon, T., Yamazaki, M., Webb, J., Arnold, T. D., Rosi, S., ... & Fu, Y. H. (2022). Microglia are involved in the protection of memories formed during sleep deprivation. Neurobiology of sleep and circadian rhythms, 12, 100073.
Gomes, L. S., Costa, J. R., Campos, M. S., Marques, M. R., Biancardi, M. F., Taboga, S. R., ... & Santos, F. C. (2019). Aluminum disrupts the prenatal development of the male and female gerbil prostate (Meriones unguiculatus). Experimental and Molecular Pathology, 107, 32-42.
Gore, A., Yurina, A., Yukevich-Mussomeli, A., & Nahmani, M. (2022). Synaptic Spinules are Reliable Indicators of Excitatory Presynaptic Bouton Size and Strength in CA1 Hippocampus. bioRxiv.
Gribaudo, S., Saraulli, D., Nato, G., Bonzano, S., Gambarotta, G., Luzzati, F., ... & De Marchis, S. (2021). Neurogranin Regulates Adult-Born Olfactory Granule Cell Spine Density and Odor-Reward Associative Memory in Mice. International journal of molecular sciences, 22(8), 4269.
Grossmann, S., Hooks, Y., Wilson, L., Moore, L., O’Neill, L., Martincorena, I., ... & Campbell, P. J. (2021). Development, maturation, and maintenance of human prostate inferred from somatic mutations. Cell Stem Cell, 28(7), 1262-1274.
Hagadorn, M. A., Eck, K., Del Grosso, M., Haemmerle, X., Wcislo, W. T., & Kapheim, K. M. (2021). Age-related mushroom body expansion in male sweat bees and bumble bees. Scientific reports, 11(1), 1-8.
Hagadorn, M. A., Johnson, M. M., Smith, A. R., Seid, M. A., & Kapheim, K. M. (2021). Experience, but not age, is associated with volumetric mushroom body expansion in solitary alkali bees. Journal of Experimental Biology, 224(6), jeb238899.
Harms, K. S., Hesketh, A. V., & Page, L. R. (2019). Foregut Development and Metamorphosis in a Pyramidellid Gastropod: Modularity and Constraint within a Complex Life Cycle. The Biological Bulletin, 237(3), 254-269.
Hegermann, J., Wrede, C., Fassbender, S., Schliep, R., Ochs, M., Knudsen, L., & Mühlfeld, C. (2019). Volume-CLEM: a method for correlative light and electron microscopy in three dimensions. American Journal of Physiology-Lung Cellular and Molecular Physiology, 317(6), L778-L784.
Henneberger, C., Bard, L., Panatier, A., Reynolds, J. P., Kopach, O., Medvedev, N. I., ... & Rusakov, D. A. (2020). LTP induction boosts glutamate spillover by driving withdrawal of perisynaptic astroglia. Neuron, 108(5), 919-936.
Hernandez, E., MacNamee, S. E., Kaplan, L. R., Lance, K., Garcia‐Verdugo, H. D., Farhadi, D. S., ... & Oland, L. A. (2020). The astrocyte network in the ventral nerve cord neuropil of the Drosophila third‐instar larva. Journal of Comparative Neurology, 528(10), 1683-1703.
Holland, N. D., & Somorjai, I. M. (2020). Serial blockface SEM suggests that stem cells may participate in adult notochord growth in an invertebrate chordate, the Bahamas lancelet. EvoDevo, 11(1), 1-15.
Ishii, S., Lee, S., Urakubo, H., Kume, H., & Kasai, H. (2020). Generative and discriminative model-based approaches to microscopic image restoration and segmentation. Microscopy, 69(2), 79-91.
Jaumann, S., Rehan, S. M., Schwartz, K., & Smith, A. R. (2022). Reduced neural investment in post-reproductive females of the bee Ceratina calcarta. Scientific Reports, 12(1), 1-10.
Joyce, M. K. P., García-Cabezas, M. Á., John, Y. J., & Barbas, H. (2020). Serial prefrontal pathways are positioned to balance cognition and emotion in primates. Journal of Neuroscience, 40(43), 8306-8328.
Joyce, M. K. P., Marshall, L. G., Banik, S. L., Wang, J., Xiao, D., Bunce, J. G., & Barbas, H. (2022). Pathways for memory, cognition and emotional context: hippocampal, subgenual area 25, and amygdalar axons show unique interactions in the primate thalamic reuniens nucleus. Journal of Neuroscience, 42(6), 1068-1089.
Jung, J. H., Smith, I., & Mikesh, M. (2019). Terminal Schwann cell and vacant site mediated synapse elimination at developing neuromuscular junctions. Scientific reports, 9(1), 1-15.
Justs, K. A., Lu, Z., Chouhan, A. K., Borycz, J. A., Lu, Z., Meinertzhagen, I. A., & Macleod, G. T. (2021). Presynaptic Mitochondrial Volume and Density Scale with Presynaptic Power Demand. bioRxiv.
Justs, K. A., Lu, Z., Chouhan, A. K., Borycz, J. A., Lu, Z., Meinertzhagen, I. A., & Macleod, G. T. (2022). Presynaptic mitochondrial volume and packing density scale with presynaptic power demand. Journal of Neuroscience, 42(6), 954-967.
Karimi, F., Rafati, A., Noorafshan, A., Hosseini, L., & Karbalay-Doust, S. (2019). Sinoatrial node remodels in chronic sleep-restricted rats. Chronobiology International, 36(4), 510-516.
Katsuno, T., Belyantseva, I. A., Cartagena-Rivera, A. X., Ohta, K., Crump, S. M., Petralia, R. S., ... & Kitajiri, S. I. (2019). TRIOBP-5 sculpts stereocilia rootlets and stiffens supporting cells enabling hearing. JCI insight, 4(12).
Kaur, N., Han, W., Li, Z., Madrigal, M. P., Shim, S., Pochareddy, S., ... & Sestan, N. (2020). Neural stem cells direct axon guidance via their radial fiber scaffold. Neuron, 107(6), 1197-1211.
Kirov, S. A., Fomitcheva, I. V., & Sword, J. (2020). Rapid neuronal ultrastructure disruption and recovery during spreading depolarization-induced cytotoxic edema. Cerebral Cortex, 30(10), 5517-5531.
Kiyoshi, C. M., Aten, S., Arzola, E. P., Patterson, J. A., Taylor, A. T., Du, Y., ... & Zhou, M. (2020). Ultrastructural view of astrocyte-astrocyte and astrocyte-synapse contacts within the hippocampus. BioRxiv.
Kobrina, A., Schrode, K. M., Screven, L. A., Javaid, H., Weinberg, M. M., Brown, G., ... & Lauer, A. M. (2020). Linking anatomical and physiological markers of auditory system degeneration with behavioral hearing assessments in a mouse (Mus musculus) model of age-related hearing loss. Neurobiology of aging, 96, 87-103.
Kolobkova, I. (2020). Pathophysiological changes in the hippocampus in a murine model of episodic ataxia type 6 (Doctoral dissertation, Universitäts-und Landesbibliothek der Heinrich-Heine-Universität Düsseldorf).
Konishi, K., Mimura, M., Nonaka, T., Sase, I., Nishioka, H., & Suga, M. (2019). Practical method of cell segmentation in electron microscope image stack using deep convolutional neural network. Microscopy, 68(4), 338-341.
Konishi, K., Nonaka, T., Takei, S., Ohta, K., Nishioka, H., & Suga, M. (2021). Reducing manual operation time to obtain a segmentation learning model for volume electron microscopy using stepwise deep learning with manual correction. Microscopy, 70(6), 526-535.
Kornfeld, J., Svara, F., & Wanner, A. A. (2020). Image processing for volume electron microscopy. In Volume Microscopy (pp. 245-262). Humana, New York, NY.
Krings, M., Müller-Limberger, E., & Wagner, H. (2019). EvoDevo in owl ear asymmetry—The little owl (Athene noctua). Zoology, 132, 1-5.
Kubota, Y. (2019). Electron-Microscopy-Based Tools for Imaging Cellular Circuits and Organisms. Frontiers in Neural Circuits, 13, 64.
Kuroda, K., Iwata, K., Kiyonari10, H., Matsuda11, S., Matsuzaki, H., Yuzaki, M., ... & Sato, M. (2019). pIp3-Phldb2 is crucial for LTP regulating synaptic NMDA and AMPA receptor density and PSD95 turnover.
Lauring, M. C., Zhu, T., Luo, W., Wu, W., Yu, F., & Toomre, D. (2019). New software for automated cilia detection in cells (ACDC). Cilia, 8(1), 1-21.
LeBlang, C. J., Medalla, M., Nicoletti, N. W., Hays, E. C., Zhao, J., Shattuck, J., ... & Luebke, J. I. (2020). Reduction of the RNA binding protein TIA1 exacerbates neuroinflammation in tauopathy. Frontiers in Neuroscience, 14, 285.
Lee, J. S., Yeo, I. S., Lee, H. I., Park, J. A., Koh, K. S., & Song, W. C. (2020). Three‐dimensional reconstruction of the luminal structure of human seminal vesicle. Journal of Anatomy, 237(6), 1006-1014.
Lee, S. H., Ha, T. J., Lee, J. S., Koh, K. S., & Song, W. C. (2019). Topography of the central retinal artery relevant to retrobulbar reperfusion in filler complications. Plastic and Reconstructive Surgery, 144(6), 1295-1300.
Lee, S. H., Kim, J. N., Shin, K. J., Koh, K. S., & Song, W. C. (2020). Three-dimensional microstructures of the intracortical canals in the animal model of osteoporosis. Anatomy & Cell Biology, 53(2), 162-168.
Lee, S. H., Koh, K. S., & Song, W. C. (2020). Macro/microscopic distribution of the dorsal nerve of penis in human glans penis. Journal of Anatomy, 237(5), 849-853.
Lee, S. H., Zhang, Y., Park, J., Kim, B., Kim, Y., Lee, S. H., ... & Han, K. (2020). Haploinsufficiency of Cyfip2 Causes Lithium‐Responsive Prefrontal Dysfunction. Annals of Neurology, 88(3), 526-543.
Li, J., Pinto-Duarte, A., Zander, M., Cuoco, M. S., Lai, C. Y., Osteen, J., ... & Behrens, M. M. (2022). Dnmt3a knockout in excitatory neurons impairs postnatal synapse maturation and increases the repressive histone modification H3K27me3. Elife, 11, e66909.
Li, J., Pinto-Duarte, A., Zander, M., Lai, C. Y., Osteen, J., Fang, L., ... & Behrens, M. M. (2019). Polycomb-mediated repression compensates for loss of postnatal DNA methylation in excitatory neurons. bioRxiv.
Li, J., Pinto-Duarte, A., Zander, M., Lai, C. Y., Osteen, J., Fang, L., ... & Behrens, M. M. (2021). Dnmt3a knockout in excitatory neurons impairs postnatal synapse maturation and is partly compensated by repressive histone modification H3K27me3. bioRxiv, 2019-12.
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Zhao Chunmei, Teng E. Matthew, Summers, Jr, Robert G., Ming Guo-li, and Gage Fred H. (2006) Distinct Morphological Stages of Dentate Granule Neuron Maturation in the Adult Mouse Hippocampus. The Journal of Neuroscience, 26(1):3-11.
Zhou Lei, Martinez Sarah J., Haber Michael, Jones Emma V., Bouvier David, Doucet Guy, Corera Amadou T., Fon Edward A., Zisch Andreas H., and Murai Keith K. (2007) EphA4 Signaling Regulates Phospholipase C 1 Activation, Cofilin Membrane Association, and Dendritic Spine Morphology. The Journal of Neuroscience, 27(19):5127-5138.
Zikopoulos Basilis and Barbas Helen (2006) Prefrontal Projections to the Thalamic Reticular Nucleus form a Unique Circuit for Attentional Mechanisms. The Journal of Neuroscience, 26(28):7348-7361.
Zikopoulos Basilis and Barbas Helen (2007) Parallel Driving and Modulatory Pathways Link the Prefrontal Cortex and Thalamus. PLoS ONE, 2(9):e848.

Books

Adams Paige J., Robinson Rachel A., and Dudek Serena M. (2008) Role of Action Potentials in Regulating Gene Transcription: Relevance to LTP. Transcriptional Regulation by Neuronal Activity.
Czech J., Dittrich M., and Stiles J.R. (2009) Rapid Creation, Monte Carlo Simulation, and Visualization of Realistic 3D Cell Models. Systems Biology.
Dauguet J., Bock D., Reid R.C., Warfield S.K. (2007) Alignment of Large Image Series Using Cubic B-Splines Tessellation: Application to Transmission Electron Microscopy Data. Medical Image Computing and Computer-Assisted Intervention, 710-717.
Eroglu Cagla, Barres Ben A., and Stevens Beth (2008) Glia as Active Participants in the Development and Function of Synapses. Structural and Functional Organization of the Synapse.
Schoonover, C. Portraits of the Mind: Visualizing the Brain from Antiquity to the 21st Century, 1st edition (2010). Harry N. Abrams.
Ting Jonathan T. and Phillips Paul E.M. (2008) Neurotransmitter: Release. Wiley Encyclopedia of Chemical Biology.

Textbooks

Biology, 2nd Edition (2010). Edited by Robert Brooker, Eric Widmaier, Linda Graham, and Peter Stiling. McGraw-Hill.
Cells of the Nervous System (2005). Jennifer Morgan and Ona Bloom. Chelsea House Publications.
Encyclopedia of Molecular Cell Biology and Molecular Medicine, 2nd Edition (2005). Edited by Robert A. Meyers, Vol. 9, pp. 139-165. Wiley-VCH.
Essential Cell Biology, 3rd edition (2013). Edited by Bruce Alberts, Dennis Bray, etc. Russian edition, published by BKL Publishers (Moscow, Russia).
Fundamental Neuroscience, 3rd Edition (2008). Edited by Larry Squire, Darwin Berg, Floyd Bloom, Sascha du Lac, Anirvan Ghosh, and Nicholas Spitzer. Elsevier.
Neuroscience in the 21st Century, 1st edition (2013). Edited by Donald W. Pfaff. Springer.
Neurosciencias (2013). Edited by Ana Cristina Rego, Catarina R. Olivieira, and Carlos B. Duarte. LIDEL Press, Portugal.
The Hippocampus Book (2006). Edited by Per Andersen, Richard Morris, David Amaral, and Tim Bliss. Oxford University Press.
The Neurobiology of Learning and Memory, 3rd Edition (2020). Jerry W. Rudy. Sinauer Associates, Inc.