Selected sources using SynapseWeb for further research, education, and healthcare

Assorted images from other laboratories created using Reconstruct

	Veins and vessels in fetal mouse liver (PDF). Khan JA, Mendelson A, Kunisaki Y, Birbrair A, Kou Y, Arnal-Estapé A, Pinho S, Ciero P, et al. (2016) Fetal liver hematopoietic stem cell niches associate with portal vessels. Science, 351(6269):176-180.
	Molar and mandible in human (PDF). Park M-K, Jung W, Bae J-H, Kwak H-H (2016) Anatomical and radiographic study of the mandibular retromolar canal. Journal of Dental Sciences.
	Ant brain (PDF). Seid MA, Junge E (2016) Social isolation and brain development in the ant Camponotus floridanus. The Science of Nature, 103:42.
	Mandibular gland of parasitoid wasp (PDF). Stökl J, Herzner G (2016) Morphology and ultrastructure of the allomone and sex-pheromone producing mandibular gland of the parasitoid wasp Leptopilina heterotoma (Hymenoptera: Figitidae). Arthropod Structure & Development, 45(4):333–340.
	Olfactory bulb in rat (PDF). Bourne JN, Schoppa NE (2016) Three-dimensional synaptic analyses of mitral cell and external tufted cell dendrites in rat olfactory bulb glomeruli. J. Comp. Neurol.
	Effect of bone degeneration on hearing (PDF). Bloch SL, Sørensen MS (2016) The role of connectivity and stochastic osteocyte behavior in the distribution of perilabyrinthine bone degeneration. A Monte Carlo based simulation study. Hearing Research, 335:1–8.
	Clavicle bone of human fetus (PDF). Baumgart M, Wiśniewski M, Grzonkowska M, et al. (2016) Morphometric study of the two fused primary ossification centers of the clavicle in the human fetus. Surgical and Radiologic Anatomy, 38(8):937–945.
	Sea lily (PDF). Amemiya S, Omori A, Tsurugaya T, Hibino T, Yamaguchi M, Kuraishi R, Kiyomoto M, Minokawa T (2016) Early stalked stages in ontogeny of the living isocrinid sea lily Metacrinus rotundus. Acta Zoologica (Stockholm), 97:102–116.

1999-2015

	3D reconstruction of mitochondria in mouse dendrites (7MB PDF). Traka M, Millen KJ, Collins D, Elbaz B, Kidd GJ, Gomez CM, Popko B (2013) WDR81 is necessary for purkinje and photoreceptor cell survival. The Journal of Neuroscience, 33(16):6834-44.
	3D reconstruction of mouse neuromuscular junction (7MB PDF). Smith IW, Mikesh M, Il Lee Y, Thompson WJ (2013) Terminal Schwann Cells Participate in the Competition Underlying Neuromuscular Synapse Elimination. The Journal of Neuroscience, 33(45):17724-17736.
	3D reconstruction of presynaptic vesicles (1MB PDF). Ostroff LE, Cain CK, Jindal N, Dar N, Ledoux JE (2012) Stability of presynaptic vesicle pools and changes in synapse morphology in the amygdala following fear learning in adult rats. The Journal of Comparative Neurology, 520(2):295-314.
	3D reconstruction of honeybee medial calyx (6MB PDF). Groh C, Lu Z, Meinertzhagen IA, Rossler W (2012) Age-related plasticity in the synaptic ultrastructure of neurons in the mushroom body calyx of the adult honeybee Apis mellifera. The Journal of Comparative Neurology, 520(15): 3509-3527.
	3D reconstruction of perivascular astroglial sheath (800KB PDF). Mathiisen TM, Lehre KP, Danbolt NC, and Ottersen OP (2010) The perivascular astroglial sheath provides a complete covering of the brain microvessels. Glia, 58(9): 1094-1103.
	3D reconstruction of numerous dendritic spines (500KB PDF). Katz Y, Menon V, Nicholson DA, Geinisman Y, Kath WL, and Spruston N (2009) Synapse Distribution Suggests a Two-Stage Model of Dendritic Integration in CA1 Pyramidal Neurons. Neuron, 63(2):171-177.
	3D reconstruction of a sea urchin sensory neuron (1MB PDF). Bishop CD and Hall BK (2009) Sniffing Out New Data and Hypotheses on the Form, Function, and Evolution of the Echinopluteus Post-Oral Vibratile Lobe. The Biological Bulletin, 216:307-321.
	3D reconstruction of synapse and vesicles (1.3MB PDF). Branco T, Staras K, Darcy KJ, and Goda Y (2008) Local Dendritic Activity Sets Release Probability at Hippocampal Synapses. Neuron, 59(3):475-485.
	3D reconstruction of an Ivy cell bouton and dendrite (2.1MB PDF). Fuentealba P and Begum R (2008) Ivy Cells: A Population of Nitric-Oxide-Producing, Slow-Spiking GABAergic Neurons and Their Involvement in Hippocampal Network Activity. Neuron, 57(6):917-929.
	3D reconstruction of mitochondrial sheath (300KB PDF). Ho H-C, Wey S (2007) Three dimensional rendering of the mitochondrial sheath morphogenesis during mouse spermiogenesis. Microscopy Research and Technique, 70(8):719-723.
	3D reconstruction of mitochondrial cristae (1MB PDF). Frezza C, Cipolat S, de Brito OM, Micaroni M, Beznoussenko GV, Rudka T, Bartoli D, Polishuck RS, Danial NN, De Strooper B, Scorrano L (2006) OPA1 Controls Apoptotic Cristae Remodeling Independently from Mitochondrial Fusion. Cell, 126(1):177-189.
	3D reconstruction of axons (750KB PDF). Bishop DL, Misgeld T, Walsh MK, Gan W-B, and Lichtman JW (2004) Axon Branch Removal at Developing Synapses by Axosome Shedding. Neuron, 44(4):651-661.
	3D reconstruction of dendritic spines (780KB PDF). Segev I, London M (2000) Untangling Dendrites with Quantitative Models. Science, 290(5492):744-750.
	3D reconstruction of multiple spine synapses (400KB PDF). Toni N, Buchs P-A, Nikonenko I, Bron CR, Muller D (1999) LTP promotes formation of multiple spine synapses between a single axon terminal and a dendrite. Nature, 402:421-425.
	3D reconstruction of nerve fasciculation pattern (1MB PDF). Lu J, Tapia JC, White OL, Lichtman JW (2009) The Interscutularis Muscle Connectome. PLoS Biology, 7(2):e1000032.
	3D reconstruction of fish fossil braincase (4MB PDF). Hamel M-H, Poplin C (2008) The Braincase Anatomy of Lawrenciella schaefferi, Actinopterygian from the Upper Carboniferous of Kansas (USA). Journal of Vertebrate Paleontology, 28(4):989-1006.
	3D reconstruction of mouse Peyer's patch (2MB PDF). Ma B, Wang L, von Wasielewski R, Lindenmaier W, and Dittmar KEJ (2008) Serial sectioning and three-dimensional reconstruction of mouse Peyer's patch. Micron, 39(7):967-975.
	3D reconstruction of two calyces of Held (700KB PDF). Hoffpauir BK (2007) Serial sectioning and electron microscopy of large tissue volumes for 3D analysis and reconstruction: a case study of the calyx of Held. Nature Protocols, 2:9-22.
	3D reconstruction of infected tree bark (700KB PDF). Parke JL, Oh E, Voelker S, Hansen EM, Buckles G, Lachenbruch B (2007) Phytophthora ramorum Colonizes Tanoak Xylem and Is Associated with Reduced Stem Water Transport. Phytopathology, 97(12):1558-1567.
	3D reconstruction of mite olfactory lobes (300KB PDF). van Wijk M, Wadman WJ, Sabelis MW (2006) Morphology of the olfactory system in the predatory mite Phytoseiulus persimilis. Experimental and Applied Acarology, 40(3-4):217-229.
	3D reconstruction of moth olfactory receptor neurons (2MB PDF). Lee S-G, Vickers NJ, Baker TC (2006) Glomerular Targets of Heliothis subflexa Male Olfactory Receptor Neurons Housed within Long Trichoid Sensilla. Chemical Senses, 31(9):821-834.
	3D reconstruction of Al-Si alloy (600KB PDF). Dinnis CM, Dahle AK, Taylor JA (2005) Three-dimensional analysis of eutectic grains in hypoeutectic Al–Si alloys. Materials Science and Engineering: A, 392(1-2):440-448.

Journal Articles

List of peer-reviewed articles citing SynapseWeb or Reconstruct

2019-2022

1. Alimohamadi, H., Bell, M. K., Halpain, S., & Rangamani, P. (2021). Mechanical principles governing the shapes of dendritic spines. Frontiers in Physiology, 836.
2. Anaya, E. F. (2020). Age-related alterations on ultrastructure and gene expression profile of the female blood-brain barrier. Open University (United Kingdom).
3. Ashaber, M., Zalányi, L., Pálfi, E., Stuber, I., Kovács, T., Roe, A. W., ... & Négyessy, L. (2020). Synaptic organization of cortico‐cortical communication in primates. European Journal of Neuroscience, 52(9), 4037-4056.
4. Aten, S., Kiyoshi, C. M., Arzola, E. P., Patterson, J. A., Taylor, A. T., Du, Y., ... & Zhou, M. (2022). Ultrastructural view of astrocyte arborization, astrocyte-astrocyte and astrocyte-synapse contacts, intracellular vesicle-like structures, and mitochondrial network. Progress in Neurobiology, 213, 102264.
5. Aziz, W., Kraev, I., Mizuno, K., Kirby, A., Fang, T., Rupawala, H., ... & Giese, K. P. (2019). Multi-input synapses, but not LTP-strengthened synapses, correlate with hippocampal memory storage in aged mice. Current Biology, 29(21), 3600-3610.
6. Bai, G., & Zhang, M. (2022). Inhibitory postsynaptic density from the lens of phase separation. Oxford Open Neuroscience, 1.
7. Ball, J. M., Chen, S., & Li, W. (2021). Cone mitochondria act as microlenses to enhance light delivery and confer Stiles-Crawford-like direction sensitivity. bioRxiv.
8. Ball, J. M., Chen, S., & Li, W. (2022). Mitochondria in cone photoreceptors act as microlenses to enhance photon delivery and confer directional sensitivity to light. Science advances, 8(9), eabn2070.
9. Baltan, S., Jawaid, S. S., Chomyk, A. M., Kidd, G. J., Chen, J., Battapady, H. D., ... & Trapp, B. D. (2021). Neuronal hibernation following hippocampal demyelination. Acta neuropathologica communications, 9(1), 1-15.
10. Banks, S. M., Medeiros, A. T., McQuillan, M., Busch, D. J., Ibarraran-Viniegra, A. S., Sousa, R., ... & Morgan, J. R. (2020). Hsc70 ameliorates the vesicle recycling defects caused by excess α-synuclein at synapses. Eneuro, 7(1).
11. Batalla-Covello, J., Abidi, W., Ngai, H. W., Hyde, C., Machado, D., Majid, A. A., ... & Mooney, R. (2021). Allogeneic Human Neural Stem Cells for Improved Therapeutic Delivery to Peritoneal Ovarian Cancer.
12. Baudier, K. M., Bennett, M. M., Barrett, M., Cossio, F. J., Wu, R. D., O'Donnell, S., ... & Fewell, J. H. (2022). Soldier neural architecture is temporarily modality specialized but poorly predicted by repertoire size in the stingless bee Tetragonisca angustula. Journal of Comparative Neurology, 530(4), 672-682.
13. Bednarz, K. (2019). Changes in synaptic connectivity during ultradian growth hormone secretion are correlated with changes in astrocytic coverage of neurons as seen in super-resolution and electron microscopy. McGill University (Canada).
14. Beeson, A. L. S. (2022). Estrous Cycle Impacts on Dendritic Spine Plasticity in Rat Nucleus Accumbens Core, Shell, and Caudate-putamen.
15. Beguelini, M. R., Santiago, C. S., Morielle-Versute, E., & Taboga, S. R. (2020). Morphophysiological variations of the female reproductive organs of the vespertilionid bat Myotis nigricans during its different reproductive phases. Theriogenology, 158, 121-137.
16. Berg, D. A., Su, Y., Jimenez-Cyrus, D., Patel, A., Huang, N., Morizet, D., ... & Bond, A. M. (2019). A common embryonic origin of stem cells drives developmental and adult neurogenesis. Cell, 177(3), 654-668.
17. Bhandari, P., Vandael, D., Fernández-Fernández, D., Fritzius, T., Kleindienst, D., Önal, C., ... & Koppensteiner, P. (2021). GABAB receptor auxiliary subunits modulate Cav2. 3-mediated release from medial habenula terminals. Elife, 10, e68274.
18. Calì, C., Kare, K., Agus, M., Castillo, M. F. V., Boges, D., Hadwiger, M., & Magistretti, P. (2019). A method for 3D reconstruction and virtual reality analysis of glial and neuronal cells. JoVE (Journal of Visualized Experiments), (151), e59444.
19. Carrier, M., Robert, M. È., González Ibáñez, F., Desjardins, M., & Tremblay, M. È. (2020). Imaging the neuroimmune dynamics across space and time. Frontiers in Neuroscience, 14, 903.
20. Chaichim, C., Tomanic, T., Stefen, H., Paric, E., Gamaroff, L., Suchowerska, A. K., ... & Power, J. (2021). Overexpression of Tropomyosin Isoform Tpm3. 1 Does Not Alter Synaptic Function in Hippocampal Neurons. International Journal of Molecular Sciences, 22(17), 9303.
21. Chun Chung, G. H., Gissen, P., Stefan, C. J., & Burden, J. J. (2022). Three-dimensional Characterization of Interorganelle Contact Sites in Hepatocytes using Serial Section Electron Microscopy. Journal of Visualized Experiments, 184.
22. Clarkson, C., Smeal, R. M., Hasenoehrl, M. G., White, J. A., Rubio, M. E., & Wilcox, K. S. (2020). Ultrastructural and functional changes at the tripartite synapse during epileptogenesis in a model of temporal lobe epilepsy. Experimental neurology, 326, 113196.
23. Courson, J. A., Landry, P. T., Do, T., Spehlmann, E., Lafontant, P. J., Patel, N., ... & Burns, A. R. (2021). Serial Block-Face Scanning Electron Microscopy (SBF-SEM) of Biological Tissue Samples. JoVE (Journal of Visualized Experiments), (169), e62045.
24. da Silva Gomes, L., da Silva Lima, D., Costa, J. R., da Silva, C. R. B., Marques, M. R., de Azevedo Brito, P. V., ... & Dos Santos, F. C. A. (2020). Neonatal exposure to aluminum chloride disrupts branching morphogenesis and hormonal signaling of the ventral male prostate and female prostate of gerbils. Journal of Trace Elements in Medicine and Biology, 61, 126559.
25. Dalkara, T. (2019). Pericytes: a novel target to improve success of recanalization therapies. Stroke, 50(10), 2985-2991.
26. DelGiorno, K. E., Chung, C. Y., Vavinskaya, V., Maurer, H. C., Novak, S. W., Lytle, N. K., ... & Wahl, G. M. (2020). Tuft cells inhibit pancreatic tumorigenesis in mice by producing prostaglandin D2. Gastroenterology, 159(5), 1866-1881.
27. Dembitskaya, Y., Gavrilov, N., Kraev, I., Doronin, M., Tang, Y., Li, L., & Semyanov, A. (2021). Attenuation of the extracellular matrix increases the number of synapses but suppresses synaptic plasticity through upregulation of SK channels. Cell Calcium, 96, 102406.
28. Dembitskaya, Y., Gavrilov, N., Kraev, I., Doronin, M., Tyurikova, O., & Semyanov, A. (2020). Attenuation of the extracellular matrix increases the number of synapses but suppresses synaptic plasticity. bioRxiv.
29. Djurisic, M. (2020). Minimizing Hypoxia in Hippocampal Slices from Adult and Aging Mice. JoVE (Journal of Visualized Experiments), (161), e61377.
30. Drakhlis, L., Biswanath, S., Farr, C. M., Lupanow, V., Teske, J., Ritzenhoff, K., ... & Zweigerdt, R. (2021). Human heart-forming organoids recapitulate early heart and foregut development. Nature Biotechnology, 39(6), 737-746.
31. Drawitsch, F. P. (2020). Correlative three-dimensional light-and electron microscopy for long-range connectomics (Doctoral dissertation, [Sl: sn]).
32. Dudink, I., White, T. A., Ardalan, M., Mallard, C., Ballerin, G., Creed, S. J., ... & Miller, S. L. (2022). An optimized and detailed step-by-step protocol for the analysis of neuronal morphology in golgi-stained fetal sheep brain. Developmental Neuroscience, 1-19.
33. Endo, M., Maruoka, H., & Okabe, S. (2021). Advanced Technologies for Local Neural Circuits in the Cerebral Cortex. Frontiers in Neuroanatomy, 15, 757499.
34. Esmaili, Z., Naseh, M., Karimi, F., & Moosavi, M. (2022). A stereological study reveals nanoscale-alumina induces cognitive dysfunction in mice related to hippocampal structural changes. NeuroToxicology.
35. Farahani, R. A., Farah, M. C., Zhu, X. Y., Tang, H., Saadiq, I. M., Lerman, L. O., & Eirin, A. (2020). Metabolic syndrome impairs 3D mitochondrial structure, dynamics, and function in swine mesenchymal stem cells. Stem Cell Reviews and Reports, 16(5), 933-945.
36. Fehr, T. (2021). Long-Term Effects of Early-Life Anesthesia Exposures on Neuronal Ultrastructure in Rhesus Macaques (Doctoral dissertation, Icahn School of Medicine at Mount Sinai).
37. Fehr, T., Janssen, W. G., Park, J., & Baxter, M. G. (2022). Neonatal exposures to sevoflurane in rhesus monkeys alter synaptic ultrastructure in later life. bioRxiv.
38. Fitzgerald, M. L., Mackie, K., & Pickel, V. M. (2019). Ultrastructural localization of cannabinoid CB1 and mGluR5 receptors in the prefrontal cortex and amygdala. Journal of Comparative Neurology, 527(16), 2730-2741.
39. Foissner, I., & Hoeftberger, M. (2019). Chemical fixation, immunofluorescence, and immunogold labeling of electron microscopical sections. In Plant Cell Morphogenesis (pp. 43-62). Humana, New York, NY.
40. Frías-Anaya, E., Gromnicova, R., Kraev, I., Rogachevsky, V., Male, D. K., Crea, F., ... & Romero, I. A. (2021). Age-related ultrastructural neurovascular changes in the female mouse cortex and hippocampus. Neurobiology of Aging, 101, 273-284.
41. Fritzius, T., Kleindienst, D., Onal, C., Montanaro, J., Gassmann, M., Jonas, P., ... & Koppensteiner, P. GABAB receptor auxiliary subunits modulate Cav2. 3-mediated release from medial habenula terminals.
42. Gentry, N. (2021). Genetic and neurobiological factors mitigating the negative consequences of sleep deficits. University of California, San Francisco.
43. Gentry, N. W., McMahon, T., Yamazaki, M., Webb, J., Arnold, T. D., Rosi, S., ... & Fu, Y. H. (2022). Microglia are involved in the protection of memories formed during sleep deprivation. Neurobiology of sleep and circadian rhythms, 12, 100073.
44. Gomes, L. S., Costa, J. R., Campos, M. S., Marques, M. R., Biancardi, M. F., Taboga, S. R., ... & Santos, F. C. (2019). Aluminum disrupts the prenatal development of the male and female gerbil prostate (Meriones unguiculatus). Experimental and Molecular Pathology, 107, 32-42.
45. Gore, A., Yurina, A., Yukevich-Mussomeli, A., & Nahmani, M. (2022). Synaptic Spinules are Reliable Indicators of Excitatory Presynaptic Bouton Size and Strength in CA1 Hippocampus. bioRxiv.
46. Gribaudo, S., Saraulli, D., Nato, G., Bonzano, S., Gambarotta, G., Luzzati, F., ... & De Marchis, S. (2021). Neurogranin Regulates Adult-Born Olfactory Granule Cell Spine Density and Odor-Reward Associative Memory in Mice. International journal of molecular sciences, 22(8), 4269.
47. Grossmann, S., Hooks, Y., Wilson, L., Moore, L., O’Neill, L., Martincorena, I., ... & Campbell, P. J. (2021). Development, maturation, and maintenance of human prostate inferred from somatic mutations. Cell Stem Cell, 28(7), 1262-1274.
48. Hagadorn, M. A., Eck, K., Del Grosso, M., Haemmerle, X., Wcislo, W. T., & Kapheim, K. M. (2021). Age-related mushroom body expansion in male sweat bees and bumble bees. Scientific reports, 11(1), 1-8.
49. Hagadorn, M. A., Johnson, M. M., Smith, A. R., Seid, M. A., & Kapheim, K. M. (2021). Experience, but not age, is associated with volumetric mushroom body expansion in solitary alkali bees. Journal of Experimental Biology, 224(6), jeb238899.
50. Harms, K. S., Hesketh, A. V., & Page, L. R. (2019). Foregut Development and Metamorphosis in a Pyramidellid Gastropod: Modularity and Constraint within a Complex Life Cycle. The Biological Bulletin, 237(3), 254-269.
51. Hegermann, J., Wrede, C., Fassbender, S., Schliep, R., Ochs, M., Knudsen, L., & Mühlfeld, C. (2019). Volume-CLEM: a method for correlative light and electron microscopy in three dimensions. American Journal of Physiology-Lung Cellular and Molecular Physiology, 317(6), L778-L784.
52. Henneberger, C., Bard, L., Panatier, A., Reynolds, J. P., Kopach, O., Medvedev, N. I., ... & Rusakov, D. A. (2020). LTP induction boosts glutamate spillover by driving withdrawal of perisynaptic astroglia. Neuron, 108(5), 919-936.
53. Hernandez, E., MacNamee, S. E., Kaplan, L. R., Lance, K., Garcia‐Verdugo, H. D., Farhadi, D. S., ... & Oland, L. A. (2020). The astrocyte network in the ventral nerve cord neuropil of the Drosophila third‐instar larva. Journal of Comparative Neurology, 528(10), 1683-1703.
54. Holland, N. D., & Somorjai, I. M. (2020). Serial blockface SEM suggests that stem cells may participate in adult notochord growth in an invertebrate chordate, the Bahamas lancelet. EvoDevo, 11(1), 1-15.
55. Ishii, S., Lee, S., Urakubo, H., Kume, H., & Kasai, H. (2020). Generative and discriminative model-based approaches to microscopic image restoration and segmentation. Microscopy, 69(2), 79-91.
56. Jaumann, S., Rehan, S. M., Schwartz, K., & Smith, A. R. (2022). Reduced neural investment in post-reproductive females of the bee Ceratina calcarta. Scientific Reports, 12(1), 1-10.
57. Joyce, M. K. P., García-Cabezas, M. Á., John, Y. J., & Barbas, H. (2020). Serial prefrontal pathways are positioned to balance cognition and emotion in primates. Journal of Neuroscience, 40(43), 8306-8328.
58. Joyce, M. K. P., Marshall, L. G., Banik, S. L., Wang, J., Xiao, D., Bunce, J. G., & Barbas, H. (2022). Pathways for memory, cognition and emotional context: hippocampal, subgenual area 25, and amygdalar axons show unique interactions in the primate thalamic reuniens nucleus. Journal of Neuroscience, 42(6), 1068-1089.
59. Jung, J. H., Smith, I., & Mikesh, M. (2019). Terminal Schwann cell and vacant site mediated synapse elimination at developing neuromuscular junctions. Scientific reports, 9(1), 1-15.
60. Justs, K. A., Lu, Z., Chouhan, A. K., Borycz, J. A., Lu, Z., Meinertzhagen, I. A., & Macleod, G. T. (2021). Presynaptic Mitochondrial Volume and Density Scale with Presynaptic Power Demand. bioRxiv.
61. Justs, K. A., Lu, Z., Chouhan, A. K., Borycz, J. A., Lu, Z., Meinertzhagen, I. A., & Macleod, G. T. (2022). Presynaptic mitochondrial volume and packing density scale with presynaptic power demand. Journal of Neuroscience, 42(6), 954-967.
62. Karimi, F., Rafati, A., Noorafshan, A., Hosseini, L., & Karbalay-Doust, S. (2019). Sinoatrial node remodels in chronic sleep-restricted rats. Chronobiology International, 36(4), 510-516.
63. Katsuno, T., Belyantseva, I. A., Cartagena-Rivera, A. X., Ohta, K., Crump, S. M., Petralia, R. S., ... & Kitajiri, S. I. (2019). TRIOBP-5 sculpts stereocilia rootlets and stiffens supporting cells enabling hearing. JCI insight, 4(12).
64. Kaur, N., Han, W., Li, Z., Madrigal, M. P., Shim, S., Pochareddy, S., ... & Sestan, N. (2020). Neural stem cells direct axon guidance via their radial fiber scaffold. Neuron, 107(6), 1197-1211.
65. Kirov, S. A., Fomitcheva, I. V., & Sword, J. (2020). Rapid neuronal ultrastructure disruption and recovery during spreading depolarization-induced cytotoxic edema. Cerebral Cortex, 30(10), 5517-5531.
66. Kiyoshi, C. M., Aten, S., Arzola, E. P., Patterson, J. A., Taylor, A. T., Du, Y., ... & Zhou, M. (2020). Ultrastructural view of astrocyte-astrocyte and astrocyte-synapse contacts within the hippocampus. BioRxiv.
67. Kobrina, A., Schrode, K. M., Screven, L. A., Javaid, H., Weinberg, M. M., Brown, G., ... & Lauer, A. M. (2020). Linking anatomical and physiological markers of auditory system degeneration with behavioral hearing assessments in a mouse (Mus musculus) model of age-related hearing loss. Neurobiology of aging, 96, 87-103.
68. Kolobkova, I. (2020). Pathophysiological changes in the hippocampus in a murine model of episodic ataxia type 6 (Doctoral dissertation, Universitäts-und Landesbibliothek der Heinrich-Heine-Universität Düsseldorf).
69. Konishi, K., Mimura, M., Nonaka, T., Sase, I., Nishioka, H., & Suga, M. (2019). Practical method of cell segmentation in electron microscope image stack using deep convolutional neural network. Microscopy, 68(4), 338-341.
70. Konishi, K., Nonaka, T., Takei, S., Ohta, K., Nishioka, H., & Suga, M. (2021). Reducing manual operation time to obtain a segmentation learning model for volume electron microscopy using stepwise deep learning with manual correction. Microscopy, 70(6), 526-535.
71. Kornfeld, J., Svara, F., & Wanner, A. A. (2020). Image processing for volume electron microscopy. In Volume Microscopy (pp. 245-262). Humana, New York, NY.
72. Krings, M., Müller-Limberger, E., & Wagner, H. (2019). EvoDevo in owl ear asymmetry—The little owl (Athene noctua). Zoology, 132, 1-5.
73. Kubota, Y. (2019). Electron-Microscopy-Based Tools for Imaging Cellular Circuits and Organisms. Frontiers in Neural Circuits, 13, 64.
74. Kuroda, K., Iwata, K., Kiyonari10, H., Matsuda11, S., Matsuzaki, H., Yuzaki, M., ... & Sato, M. (2019). pIp3-Phldb2 is crucial for LTP regulating synaptic NMDA and AMPA receptor density and PSD95 turnover.
75. Lauring, M. C., Zhu, T., Luo, W., Wu, W., Yu, F., & Toomre, D. (2019). New software for automated cilia detection in cells (ACDC). Cilia, 8(1), 1-21.
76. LeBlang, C. J., Medalla, M., Nicoletti, N. W., Hays, E. C., Zhao, J., Shattuck, J., ... & Luebke, J. I. (2020). Reduction of the RNA binding protein TIA1 exacerbates neuroinflammation in tauopathy. Frontiers in Neuroscience, 14, 285.
77. Lee, J. S., Yeo, I. S., Lee, H. I., Park, J. A., Koh, K. S., & Song, W. C. (2020). Three‐dimensional reconstruction of the luminal structure of human seminal vesicle. Journal of Anatomy, 237(6), 1006-1014.
78. Lee, S. H., Ha, T. J., Lee, J. S., Koh, K. S., & Song, W. C. (2019). Topography of the central retinal artery relevant to retrobulbar reperfusion in filler complications. Plastic and Reconstructive Surgery, 144(6), 1295-1300.
79. Lee, S. H., Kim, J. N., Shin, K. J., Koh, K. S., & Song, W. C. (2020). Three-dimensional microstructures of the intracortical canals in the animal model of osteoporosis. Anatomy & Cell Biology, 53(2), 162-168.
80. Lee, S. H., Koh, K. S., & Song, W. C. (2020). Macro/microscopic distribution of the dorsal nerve of penis in human glans penis. Journal of Anatomy, 237(5), 849-853.
81. Lee, S. H., Zhang, Y., Park, J., Kim, B., Kim, Y., Lee, S. H., ... & Han, K. (2020). Haploinsufficiency of Cyfip2 Causes Lithium‐Responsive Prefrontal Dysfunction. Annals of Neurology, 88(3), 526-543.
82. Li, J., Pinto-Duarte, A., Zander, M., Cuoco, M. S., Lai, C. Y., Osteen, J., ... & Behrens, M. M. (2022). Dnmt3a knockout in excitatory neurons impairs postnatal synapse maturation and increases the repressive histone modification H3K27me3. Elife, 11, e66909.
83. Li, J., Pinto-Duarte, A., Zander, M., Lai, C. Y., Osteen, J., Fang, L., ... & Behrens, M. M. (2019). Polycomb-mediated repression compensates for loss of postnatal DNA methylation in excitatory neurons. bioRxiv.
84. Li, J., Pinto-Duarte, A., Zander, M., Lai, C. Y., Osteen, J., Fang, L., ... & Behrens, M. M. (2021). Dnmt3a knockout in excitatory neurons impairs postnatal synapse maturation and is partly compensated by repressive histone modification H3K27me3. bioRxiv, 2019-12.
85. Luján, R., Merchán-Pérez, A., Soriano, J., Martín-Belmonte, A., Aguado, C., Alfaro-Ruiz, R., ... & DeFelipe, J. (2021). Neuron Class and Target Variability in the Three-Dimensional Localization of SK2 Channels in Hippocampal Neurons as Detected by Immunogold FIB-SEM. Frontiers in Neuroanatomy, 15, 781314.
86. Mailho-Fontana, P. L., Jared, C., Antoniazzi, M. M., Sciani, J. M., Pimenta, D. C., Stokes, A. N., ... & Brodie, E. D. (2019). Variations in tetrodotoxin levels in populations of Taricha granulosa are expressed in the morphology of their cutaneous glands. Scientific reports, 9(1), 1-8.
87. Maldarine, J. S., Sanches, B. D., Cabral, Á. S., Lima, M. L., Guerra, L. H., Baraldi, C. M., ... & Taboga, S. R. (2019). Prenatal exposure to finasteride promotes sex-specific changes in gerbil prostate development. Reproduction, Fertility and Development, 31(11), 1719-1729.
88. Mauricio, B., Mailho-Fontana, P. L., Sato, L. A., Barbosa, F. F., Astray, R. M., Kupfer, A., ... & Antoniazzi, M. M. (2021). Morphology of the Cutaneous Poison and Mucous Glands in Amphibians with Particular Emphasis on Caecilians (Siphonops annulatus). Toxins 2021, 13, 779.
89. Mauricio, B., Mailho-Fontana, P. L., Sato, L. A., Barbosa, F. F., Astray, R. M., Kupfer, A., ... & Antoniazzi, M. M. (2021). Morphology of the cutaneous poison and mucous glands in amphibians with particular emphasis on caecilians (Siphonops annulatus). Toxins, 13(11), 779.
90. Melo, N., Wolff, G. H., Costa-da-Silva, A. L., Arribas, R., Triana, M. F., Gugger, M., ... & Stensmyr, M. C. (2020). Geosmin attracts Aedes aegypti mosquitoes to oviposition sites. Current Biology, 30(1), 127-134.
91. Mendelsohn, R., Garcia, G. C., Bartol, T. M., Lee, C. T., Khandelwal, P., Liu, E., ... & Rangamani, P. (2022). Morphological principles of neuronal mitochondria. Journal of Comparative Neurology, 530(6), 886-902.
92. Mereuta, O. M., Fitzgerald, S., Christensen, T. A., Jaspersen, A. L., Dai, D., Abbasi, M., ... & Brinjikji, W. (2021). High-resolution scanning electron microscopy for the analysis of three-dimensional ultrastructure of clots in acute ischemic stroke. Journal of neurointerventional surgery, 13(10), 906-911.
93. Meriney, S., & Fanselow, E. (2019). Synaptic transmission. Academic Press.
94. Moghaddam, M. H., Bayat, A. H., Eskandari, N., Abdollahifar, M. A., Fotouhi, F., Forouzannia, A., ... & Aliaghaei, A. (2021). Elderberry diet ameliorates motor function and prevents oxidative stress-induced cell death in rat models of Huntington disease. Brain Research, 1762, 147444.
95. Moghaddam, M. H., Boroujeni, M. E., Vakili, K., Fathi, M., Abdollahifar, M. A., Eskandari, N., ... & Aliaghaei, A. (2021). Functional and structural alternations in the choroid plexus upon methamphetamine exposure. Neuroscience Letters, 764, 136246.
96. Mohamed, D. E. Z. I. R. I. (2021). Etude morphologique et structurale des noyaux supraoptiques chez la gerboise (Jaculus jaculus) (Doctoral dissertation).
97. Monday, H. R. (2020). Protein Synthesis in Structural and Functional Plasticity of the Mature Mammalian Presynaptic Terminal. Albert Einstein College of Medicine.
98. Mooney, R., Abidi, W., Batalla-Covello, J., Ngai, H. W., Hyde, C., Machado, D., ... & Aboody, K. S. (2021). Allogeneic human neural stem cells for improved therapeutic delivery to peritoneal ovarian cancer. Stem cell research & therapy, 12(1), 1-11.
99. Morozov, Y. M., Mackie, K., & Rakic, P. (2020). Cannabinoid type 1 receptor is undetectable in rodent and primate cerebral neural stem cells but participates in radial neuronal migration. International journal of molecular sciences, 21(22), 8657.
100. Motta, A., Schurr, M., Staffler, B., & Helmstaedter, M. (2019). Big data in nanoscale connectomics, and the greed for training labels. Current opinion in neurobiology, 55, 180-187.
101. Müller-Thomsen, L., Borgmann, D., Morcinek, K., Schröder, S., Dengler, B., Moser, N., ... & Huggenberger, S. (2020). Consequences of hyperphosphorylated tau on the morphology and excitability of hippocampal neurons in aged tau transgenic mice. Neurobiology of Aging, 93, 109-123.
102. Munoz-Ballester, C., Mahmutovic, D., Rafiqzad, Y., Korot, A., & Robel, S. (2022). Mild Traumatic Brain Injury-Induced Disruption of the Blood-Brain Barrier Triggers an Atypical Neuronal Response. Frontiers in cellular neuroscience, 16.
103. Nahirney, P. C., & Tremblay, M. E. (2021). Brain ultrastructure: putting the pieces together. Frontiers in cell and developmental biology, 9, 629503.
104. Nahmani, M. (2019). Versatile undergraduate neurobiology course-based research experiences using open access 3D electron microscopy image volumes. Journal of Undergraduate Neuroscience Education, 18(1), A65.
105. Nguyen, V. D., Leoni, M., Dancheva, T., Jansson, J., Hoffman, J., Wassermann, D., & Li, J. R. (2019). Portable simulation framework for diffusion MRI. Journal of Magnetic Resonance, 309, 106611.
106. Paget-Blanc, V., Pfeffer, M. E., Pronot, M., Lapios, P., Angelo, M. F., Walle, R., ... & Herzog, E. (2022). A synaptomic analysis reveals dopamine hub synapses in the mouse striatum. Nature Communications, 13(1), 1-19.
107. Pahlke, S., Seid, M. A., Jaumann, S., & Smith, A. (2021). The loss of sociality is accompanied by reduced neural investment in mushroom body volume in the sweat bee Augochlora pura (Hymenoptera: Halictidae). Annals of the Entomological Society of America, 114(5), 637-642.
108. Parajuli, L. K., Urakubo, H., Takahashi-Nakazato, A., Ogelman, R., Iwasaki, H., Koike, M., ... & Okabe, S. (2020). Geometry and the organizational principle of spine synapses along a dendrite. Eneuro, 7(6).
109. Parajuli, L. K., Wako, K., Maruo, S., Kakuta, S., & Koike, M. (2020). Unique synaptic topography of crest-type synapses in the interpeduncular nucleus. Biochemical and Biophysical Research Communications, 530(1), 130-135.
110. Parajuli, L. K., Wako, K., Maruo, S., Kakuta, S., Taguchi, T., Ikuno, M., ... & Koike, M. (2020). Developmental changes in dendritic spine morphology in the striatum and their alteration in an A53T α-synuclein transgenic mouse model of Parkinson’s disease. eneuro, 7(4).
111. Petersen, I., Schlüter, R., Hoff, K. J., Liebscher, V., Bange, G., Riedel, K., & Pané-Farré, J. (2020). Non-invasive and label-free 3D-visualization shows in vivo oligomerization of the staphylococcal alkaline shock protein 23 (Asp23). Scientific reports, 10(1), 1-7.
112. Peterson, J. L. (2020). Visualizing Cochlear Specializations that Enhance Protection of Hearing Function in Bats (Doctoral dissertation, Johns Hopkins University).
113. Pfeffer, M. E., Pronot, M., Angelo, M. F., Walle, R., Cordelières, F. P., Levet, F., ... & Herzog, E. (2020). Synaptic and supra-synaptic organisation of the dopaminergic projection to the striatum. BioRxiv.
114. Puścian, A., Winiarski, M., Borowska, J., Łęski, S., Górkiewicz, T., Chaturvedi, M., ... & Knapska, E. (2022). Targeted therapy of cognitive deficits in fragile X syndrome. Molecular Psychiatry, 27(6), 2766-2776.
115. Ramos, J. G., de Assis Silva, J. P., Manso, L. A., Rodrigues, G. A., Taboga, S. R., de Carvalho, H. F., ... & Biancardi, M. F. (2020). Developmental changes induced by exogenous testosterone during early phases of prostate organogenesis. Experimental and Molecular Pathology, 115, 104473.
116. Rey, S., Marra, V., Smith, C., & Staras, K. (2020). Nanoscale remodeling of functional synaptic vesicle pools in Hebbian plasticity. Cell reports, 30(6), 2006-2017.
117. Rodriguez, C., Prieto, G. I., Vega, I. A., & Castro-Vazquez, A. (2019). Functional and evolutionary perspectives on gill structures of an obligate air-breathing, aquatic snail. PeerJ, 7, e7342.
118. Rodriguez, C., Prieto, G. I., Vega, I. A., & Castro-Vazquez, A. (2021). Morphological grounds for the obligate aerial respiration of an aquatic snail: functional and evolutionary perspectives. PeerJ, 9, e10763.
119. Román-Vendrell, C., Medeiros, A. T., Sanderson, J. B., Jiang, H., Bartels, T., & Morgan, J. R. (2021). Effects of Excess Brain-Derived Human α-Synuclein on Synaptic Vesicle Trafficking. Frontiers in Neuroscience, 15, 639414.
120. Rozanski, A. N., Cini, A., Lopreto, T. E., Gandia, K. M., Hauber, M. E., Cervo, R., & Uy, F. M. (2022). Differential investment in visual and olfactory brain regions is linked to the sensory needs of a wasp social parasite and its host. Journal of Comparative Neurology, 530(4), 756-767.
121. Salmon, C. K., Pribiag, H., Gizowski, C., Farmer, W. T., Cameron, S., Jones, E. V., ... & Murai, K. K. (2020). Depolarizing GABA transmission restrains activity-dependent glutamatergic synapse formation in the developing hippocampal circuit. Frontiers in Cellular Neuroscience, 14, 36.
122. Sanches, B. D. A., Tamarindo, G. H., dos Santos Maldarine, J., da Silva, A. D. T., Dos Santos, V. A., Lima, M. L. D., ... & Carvalho, H. F. (2020). Telocytes contribute to aging-related modifications in the prostate. Scientific Reports, 10(1), 1-12.
123. Sato, Y., & Okabe, S. (2019). Nano-scale analysis of synapse morphology in an autism mouse model with 15q11-13 copy number variation using focused ion beam milling and scanning electron microscopy. Microscopy, 68(2), 122-132.
124. Sayol, F., Collado, M. Á., Garcia-Porta, J., Seid, M. A., Gibbs, J., Agorreta, A., ... & Bartomeus, I. (2020). Feeding specialization and longer generation time are associated with relatively larger brains in bees. Proceedings of the Royal Society B, 287(1935), 20200762.
125. Schaefer, M. L., Perez, P. J., Wang, M., Gray, C., Krall, C., Sun, X., ... & Johns, R. A. (2020). Neonatal isoflurane anesthesia or disruption of postsynaptic density-95 protein interactions change dendritic spine densities and cognitive function in juvenile mice. Anesthesiology, 133(4), 812-823.
126. Schaefer, M. L., Wang, M., Perez, P. J., Coca Peralta, W., Xu, J., & Johns, R. A. (2019). Nitric oxide donor prevents neonatal isoflurane-induced impairments in synaptic plasticity and memory. Anesthesiology, 130(2), 247-262.
127. Seo, N. Y., Kim, G. H., Noh, J. E., Shin, J. W., Lee, C. H., & Lee, K. J. (2021). Selective Regional Loss of Cortical Synapses Lacking Presynaptic Mitochondria in the 5xFAD Mouse Model. Frontiers in Neuroanatomy, 46.
128. Shaik, F. A., Ihida, S., Ikeuchi, Y., Tixier-Mita, A., & Toshiyoshi, H. (2020). TFT sensor array for real-time cellular characterization, stimulation, impedance measurement and optical imaging of in-vitro neural cells. Biosensors and Bioelectronics, 169, 112546.
129. Shang, P., Lindberg, D., Starski, P., Peyton, L., Hong, S. I., Choi, S., & Choi, D. S. (2020). Chronic alcohol exposure induces aberrant mitochondrial morphology and inhibits respiratory capacity in the medial prefrontal cortex of mice. Frontiers in Neuroscience, 14, 561173.
130. Shi, A. K. (2021). Purified Exosome Product Enhances Neovascularization in Peripheral Arterial Disease (Doctoral dissertation, College of Medicine-Mayo Clinic).
131. Shi, A., Li, J., Qiu, X., Sabbah, M., Boroumand, S., Huang, T. C. T., ... & Moran, S. L. (2021). TGF-β loaded exosome enhances ischemic wound healing in vitro and in vivo. Theranostics, 11(13), 6616.
132. Shibata, M., Pattabiraman, K., Lorente-Galdos, B., Andrijevic, D., Kim, S. K., Kaur, N., ... & Sestan, N. (2021). Regulation of prefrontal patterning and connectivity by retinoic acid. Nature, 598(7881), 483-488.
133. Shibata, M., Pattabiraman, K., Muchnik, S. K., Kaur, N., Morozov, Y. M., Cheng, X., ... & Sestan, N. (2021). Hominini-specific regulation of CBLN2 increases prefrontal spinogenesis. Nature, 598(7881), 489-494.
134. Śliwińska, M. A., Cały, A., Borczyk, M., Ziółkowska, M., Skonieczna, E., Chilimoniuk, M., ... & Radwanska, K. (2020). Long-term memory upscales volume of postsynaptic densities in the process that requires autophosphorylation of αCaMKII. Cerebral Cortex, 30(4), 2573-2585.
135. Smith, D., & Starborg, T. (2019). Serial block face scanning electron microscopy in cell biology: Applications and technology. Tissue and Cell, 57, 111-122.
136. Soll, L. G., Eisen, J. N., Vargas, K. J., Medeiros, A. T., Hammar, K. M., & Morgan, J. R. (2020). α-Synuclein-112 impairs synaptic vesicle recycling consistent with its enhanced membrane binding properties. Frontiers in Cell and Developmental Biology, 8, 405.
137. Stojakovic, A., Trushin, S., Sheu, A., Khalili, L., Chang, S. Y., Li, X., ... & Trushina, E. (2020). Partial inhibition of mitochondrial complex I attenuates neurodegeneration and restores energy homeostasis and synaptic function in a symptomatic Alzheimer’s mouse model. BioRxiv.
138. Stojakovic, A., Trushin, S., Sheu, A., Khalili, L., Chang, S. Y., Li, X., ... & Trushina, E. (2021). Partial inhibition of mitochondrial complex I ameliorates Alzheimer’s disease pathology and cognition in APP/PS1 female mice. Communications biology, 4(1), 1-20.
139. Swain, D. L., Le, T. D., Yasmin, S., Fernandes, B., Lamaj, G., Dasgupta, I., ... & Gong, H. (2021). Morphological factors associated with giant vacuoles with I-pores in Schlemm's canal endothelial cells of human eyes: A serial block-face scanning electron microscopy study. Experimental eye research, 205, 108488.
140. Swain, D. L., Yasmin, S., Fernandes, B., Lamaj, G., Su, Y., & Gong, H. (2022). Schlemm’s Canal Endothelium Cellular Connectivity in Giant Vacuole and Pore Formation in Different Flow-type Areas: A Serial Block-Face Scanning Electron Microscopy Study. Frontiers in Cell and Developmental Biology, 10, 867376.
141. Takahashi-Nakazato, A., Parajuli, L. K., Iwasaki, H., Tanaka, S., & Okabe, S. (2019). Ultrastructural observation of glutamatergic synapses by focused ion beam scanning electron microscopy (FIB/SEM). In Glutamate Receptors (pp. 17-27). Humana Press, New York, NY.
142. Taneja, K., & Ganesh, S. (2021). Dendritic spine abnormalities correlate with behavioral and cognitive deficits in mouse models of Lafora disease. Journal of Comparative Neurology, 529(6), 1099-1120.
143. Timbie, C., García-Cabezas, M. Á., Zikopoulos, B., & Barbas, H. (2020). Organization of primate amygdalar–thalamic pathways for emotions. PLoS Biology, 18(2), e3000639.
144. Tukhovskaya, E. A., Ismailova, A. M., Shaykhutdinova, E. R., Slashcheva, G. A., Prudchenko, I. A., Mikhaleva, I. I., ... & Ivanov, V. T. (2021). Delta Sleep-Inducing Peptide Recovers Motor Function in SD Rats after Focal Stroke. Molecules, 26(17), 5173.
145. Urakubo, H., Bullmann, T., Kubota, Y., Oba, S., & Ishii, S. (2019). UNI-EM: an environment for deep neural network-based automated segmentation of neuronal electron microscopic images. Scientific reports, 9(1), 1-9.
146. Vallejo, D., Lindsay, C. B., González‐Billault, C., & Inestrosa, N. C. (2021). Wnt5a modulates dendritic spine dynamics through the regulation of Cofilin via small Rho GTPase activity in hippocampal neurons. Journal of Neurochemistry, 158(3), 673-693.
147. Van Horn, J. D. (2021). Bridging the Brain and Data Sciences. Big Data, 9(3), 153-187.
148. Wang, J., John, Y., & Barbas, H. (2021). Pathways for contextual memory: the primate hippocampal pathway to anterior cingulate cortex. Cerebral Cortex, 31(3), 1807-1826.
149. Watanabe, S., Davis, M. W., Kusick, G. F., Iwasa, J., & Jorgensen, E. M. (2020). SynapsEM: computer-assisted synapse morphometry. Frontiers in synaptic neuroscience, 12, 584549.
150. Weinberg, M. M., Retta, N. A., Schrode, K. M., Screven, L. A., Peterson, J. L., Moss, C. F., ... & Lauer, A. M. (2021). Deafness in an auditory specialist, the big brown bat (Eptesicus fuscus). Hearing Research, 412, 108377.
151. Wells, A. M., García-Cabezas, M. Á., & Barbas, H. (2020). Topological atlas of the hypothalamus in adult rhesus monkey. Brain Structure and Function, 225(6), 1777-1803.
152. Wilson, C. E., Lasher, R. S., Yang, R., Dzowo, Y., Kinnamon, J. C., & Finger, T. E. (2021). Taste Bud Connectome: Implications for Taste Information Processes. bioRxiv.
153. Wilson, C. E., Lasher, R. S., Yang, R., Dzowo, Y., Kinnamon, J. C., & Finger, T. E. (2022). Taste bud connectome: implications for taste information processing. Journal of Neuroscience, 42(5), 804-816.
154. Wong, N. F., & Xu-Friedman, M. A. (2022). Time course of activity-dependent changes in auditory nerve synapses reveals multiple underlying cellular mechanisms. Journal of Neuroscience, 42(12), 2492-2502.
155. Wood, M. B., Nowak, N., Mull, K., Goldring, A., Lehar, M., & Fuchs, P. A. (2021). Acoustic trauma increases ribbon number and size in outer hair cells of the mouse cochlea. Journal of the Association for Research in Otolaryngology, 22(1), 19-31.
156. Wrede, C., Hegermann, J., & Mühlfeld, C. (2020). Novel cell contact between podocyte microprojections and parietal epithelial cells analyzed by volume electron microscopy. American Journal of Physiology-Renal Physiology, 318(5), F1246-F1251.
157. Wu, X., Cai, Q., Feng, Z., & Zhang, M. (2020). Liquid-liquid phase separation in neuronal development and synaptic signaling. Developmental cell, 55(1), 18-29.
158. Xiandeng, W. (2021). Presynaptic Active Zone Organization Via Liquid-Liquid Phase Separation (Doctoral dissertation, Hong Kong University of Science and Technology (Hong Kong)).
159. Xie, M. J., Ishikawa, Y., Yagi, H., Iguchi, T., Oka, Y., Kuroda, K., ... & Sato, M. (2019). PIP3-Phldb2 is crucial for LTP regulating synaptic NMDA and AMPA receptor density and PSD95 turnover. Scientific reports, 9(1), 1-15.
160. Xie, M. J., Iwata, K., Ishikawa, Y., Nomura, Y., Tani, T., Murata, K., ... & Matsuzaki, H. (2021). Autistic-Like Behavior and Impairment of Serotonin Transporter and AMPA Receptor Trafficking in N-Ethylmaleimide Sensitive Factor Gene-Deficient Mice. Frontiers in Genetics, 12.
161. Xu, Z. X., Kim, G. H., Tan, J. W., Riso, A. E., Sun, Y., Xu, E. Y., ... & Xu, B. (2020). Elevated protein synthesis in microglia causes autism-like synaptic and behavioral aberrations. Nature communications, 11(1), 1-17.
162. Yahya, R., & Tazuru-Mizuno, S. (2020). FIBRE QUALITY. Journal of Tropical Forest Science, 32(4), 355-360.
163. Yahya, R., Yansen, Y., Tazuru-Mizuno, S., & Sugiyama, J. (2020). Effect of vessel diameter on variation of fiber morphology in Acacia mangium. IAWA journal, 41(1), 2-11.
164. Yamamoto, M., Guo, D. H., Hernandez, C. M., & Stranahan, A. M. (2019). Endothelial Adora2a activation promotes blood–brain barrier breakdown and cognitive impairment in mice with diet-induced insulin resistance. Journal of Neuroscience, 39(21), 4179-4192.
165. Yasuda, T., Li, D., Sha, E., Kakimoto, F., Mitani, H., Yamamoto, H., ... & Oda, S. (2022). 3D reconstructed brain images reveal the possibility of the ogg1 gene to suppress the irradiation-induced apoptosis in embryonic brain in medaka (Oryzias latipes). Journal of Radiation Research, 63(3), 319-330.
166. Yasunaga, T., Wiegel, J., Bergen, M. D., Helmstädter, M., Epting, D., Paolini, A., ... & Walz, G. (2022). Microridge-like structures anchor motile cilia. Nature communications, 13(1), 1-14.
167. Yu, S. C., Liewald, J. F., Shao, J., Costa, W. S., & Gottschalk, A. (2021). Synapsin is required for dense core vesicle capture and cAMP-dependent neuropeptide release. Journal of Neuroscience, 41(19), 4187-4201.
168. Zhang, A., Shailja, S., Borba, C., Miao, Y., Goebel, M., Ruschel, R., ... & Manjunath, B. S. (2021). Automatic Detection and Neurotransmitter Prediction of Synapses in Electron Microscopy. bioRxiv.
169. Zhang, Y. H., Xu, M., Shi, X., Sun, X. L., Mu, W., Wu, H., ... & Wu, Q. F. (2021). Cascade diversification directs generation of neuronal diversity in the hypothalamus. Cell Stem Cell, 28(8), 1483-1499.
170. Zhang, Y. Q., Lin, W. P., Huang, L. P., Zhao, B., Zhang, C. C., & Yin, D. M. (2021). Dopamine D2 receptor regulates cortical synaptic pruning in rodents. Nature communications, 12(1), 1-17.
171. Zhou, B., Chen, L., Liao, P., Huang, L., Chen, Z., Liao, D., ... & Jiang, R. (2019). Astroglial dysfunctions drive aberrant synaptogenesis and social behavioral deficits in mice with neonatal exposure to lengthy general anesthesia. PLoS biology, 17(8), e3000086.
172. Zoppè, M., Loni, T., Carlone, I., & Cianchetta, S. (2019, October). Making of The Dark Anim: Technical and Scientific Notes. In 2019 International Conference on Cyberworlds (CW) (pp. 45-52). IEEE.

2016-2018

2012-2013

1. Albrecht D et al. (2012) SPARC prevents maturation of cholinergic presynaptic terminals. Molecular and Cellular Neuroscience, 49(3):364-374.
2. Amatrudo, J. M., Weaver, C. M., Crimins, J. L., Hof, P. R., Rosene, D. L., & Luebke, J. I. (2012). Influence of highly distinctive structural properties on the excitability of pyramidal neurons in monkey visual and prefrontal cortices. The Journal of Neuroscience, 32(40), 13644-13660.
3. Arellano, J. I., Guadiana, S. M., Breunig, J. J., Rakic, P., & Sarkisian, M. R. (2012). Development and distribution of neuronal cilia in mouse neocortex. Journal of Comparative Neurology, 520(4), 848-873.
4. Balmaceda-Aguilera C et al. (2012) Glucose transporter 1 and monocarboxylate transporters 1, 2, and 4 localization within the glial cells of shark blood-brain-barriers. PLoS One, 7(2):e32409.
5. Becker, C., Ali, K., Knott, G., & Fua, P. (2012). Learning Context Cues for Synapse Segmentation. IEEE Trans Med Imaging, 32(10):1864-77.
6. Bellanger JM et al. (2012) The doublecortin-related gene zyg-8 is a microtubule organizer in Caenorhabditis elegans neurons. Journal of Cell Science, 125:5417-5427.
7. Beyer, J., Al-Awami, A., Kasthuri, N., Lichtman, J. W., Pfister, H., & Hadwiger, M. (2013). ConnectomeExplorer: Query-Guided Visual Analysis of Large Volumetric Neuroscience Data. IEEE Transactions on Visualization and Computer Graphics, 19(12), 2868-2877.
8. Biancardi MF et al. (2012) Prenatal testosterone exposure as a model for the study of endocrine-disrupting chemicals on the gerbil prostate. Exp Biol Med (Maywood), 237(11):1298-309.
9. Bláha, M., Rencová, E., Langrová, H., Lánská, M., Bláha, V., Studnicka, J., ... & Malý, J. (2012). The importance of rheological parameters in the therapy of the dry form of age-related macular degeneration with rheohaemapheresis. Clinical Hemorheology and Microcirculation, 50(4), 245-255.
10. Blanke, A., Greve, C., Mokso, R., Beckmann, F., & Misof, B. (2013). An updated phylogeny of Anisoptera including formal convergence analysis of morphological characters. Systematic Entomology.
11. Blanke, A., Wipfler, B., Letsch, H., Koch, M., Beckmann, F., Beutel, R., & Misof, B. (2012). Revival of Palaeoptera—head characters support a monophyletic origin of Odonata and Ephemeroptera (Insecta). Cladistics, 28(6), 560-581.
12. Brown CE et al. (2012) Stem-like Tumor-Initiating Cells Isolated from IL13Ra2 Expressing Gliomas Are Targeted and Killed by IL13-Zetakine–Redirected T Cells. Clin Cancer Res, 18:2199.
13. Brusco J et al. (2013) Inhibitory and Multisynaptic Spines, and Hemispherical Synaptic Specialization in the Posterodorsal Medial Amygdala of Male and Female Rats. J Comp Neurol, doi: 10.1002/cne.23518.
14. Budisantoso, T., Matsui, K., Kamasawa, N., Fukazawa, Y., & Shigemoto, R. (2012). Mechanisms underlying signal filtering at a multisynapse contact. The Journal of Neuroscience, 32(7), 2357-2376.
15. Bunce, J. G., Zikopoulos, B., Feinberg, M., & Barbas, H. (2013). Parallel prefrontal pathways reach distinct excitatory and inhibitory systems in memory-related rhinal cortices. Journal of Comparative Neurology, 521(18), 4260-4283.
16. Burgold, T., Voituron, N., Caganova, M., Tripathi, P. P., Menuet, C., Tusi, B. K., ... & Testa, G. (2012). The H3K27 demethylase JMJD3 is required for maintenance of the embryonic respiratory neuronal network, neonatal breathing, and survival. Cell reports.
17. Butcher NJ, et al. (2012) Different classes of input and output neurons reveal new features in microglomeruli of the adult Drosophila mushroom body calyx. J. Comp. Neurol., 520(10):2185-2201.
18. Cardona A, Saalfeld S, Schindelin J, Arganda-Carreras I, Preibisch S, Longair M, Tomancak P, Hartenstein V, Douglas RJ (2012) TrakEM2 Software for Neural Circuit Reconstruction. PLoS One, 7(6): e38011.
19. Chapman, R. J., Lall, V. K., Maxeiner, S., Willecke, K., Deuchars, J., & King, A. E. (2013). Localization of neurones expressing the gap junction protein Connexin45 within the adult spinal dorsal horn: a study using Cx45-eGFP reporter mice. Brain Structure and Function, 218(3):751-765.
20. Choi D-Y, et al. (2013) Topography of the Lingual Foramen Using Micro-Computed Tomography for Improving Safety During Implant Placement of Anterior Mandibular Region. Journal of Craniofacial Surgery, 24(4):1403-1407.
21. Choi, S. Y., Kim, J. Y., Kim, H. W., Cho, B., Cho, H. M., Oppenheim, R. W., ... & Sun, W. (2013). Drp1-mediated mitochondrial dynamics and survival of developing chick motoneurons during the period of normal programmed cell death. The FASEB Journal, 27(1), 51-62.
22. Christante, C. M., Beguelini, M. R., Puga, C. C., Negrin, A. C., Morielle-Versute, E., Vilamaior, P. S., & Taboga, S. R. (2013). Structure, histochemistry and seasonal variations of the male reproductive accessory glands in the Pallas’s mastiff bat, Molossus molossus (Chiroptera: Molossidae). Reproduction, Fertility and Development.
23. Cornelis H, Rodriguez AL, Coop AD, Bower JM (2012) Python as a federation tool for GENESIS 3.0. PLoS One, 7(1):e29018.
24. Cueva JG et al. (2012) Posttranslational Acetylation of a-Tubulin Constrains Protofilament Number in Native Microtubules. Current Biology, 22(12):1066-1074.
25. da Costa NM et al. (2013) Diversity of thalamorecipient spine morphology in cat visual cortex and its implication for synaptic plasticity. J Comp Neurol, 521(9):2058-2066.
26. D’Amelio, M., & Rossini, P. M. (2012). Brain excitability and connectivity of neuronal assemblies in Alzheimer's disease: From animal models to human findings. Progress in neurobiology, 99(1):42-60.
27. Denk W, Briggman KL, Helmstaedter M (2012) Opinion: Structural neurobiology: missing link to a mechanistic understanding of neural computation. Nature Reviews Neuroscience, 13:351-358.
28. Eliceiri KW, et al. (2012) Biological imaging software tools. Nature Methods, 9:697–710.
29. Fajardo-Serrano, A., Wydeven, N., Young, D., Watanabe, M., Shigemoto, R., Martemyanov, K. A., ... & Luján, R. (2013). Association of Rgs7/Gß5 complexes with girk channels and GABAB receptors in hippocampal CA1 pyramidal neurons. Hippocampus, 23(12), 1231-1245.
30. Frédéric, M. Y., Lundin, V. F., Whiteside, M. D., Cueva, J. G., Tu, D. K., Kang, S. C., ... & Leroux, M. R. (2013). Identification of 526 Conserved Metazoan Genetic Innovations Exposes a New Role for Cofactor E-like in Neuronal Microtubule Homeostasis. PLoS genetics, 9(10), e1003804.
31. Fuchs, C., Abitbol, K., Burden, J. J., Mercer, A., Brown, L., Iball, J., ... & Jovanovic, J. N. (2013). GABAA receptors can initiate the formation of functional inhibitory GABAergic synapses. European Journal of Neuroscience, 38(8), 3146-3158.
32. Garcia-Cabezas MA, Barbas H (2013) A direct anterior cingulate pathway to the primate primary olfactory cortex may control attention to olfaction. Brain Struct Funct.
33. Giraud-Billoud M, Gamarra-Luques C, Castro-Vazquez A (2013) Functional anatomy of male copulatory organs of Pomacea canaliculata (Caenogastropoda, Ampullariidae). Zoomorphology, 132(2):129-143.
34. Groh C, et al. (2012) Age-related plasticity in the synaptic ultrastructure of neurons in the mushroom body calyx of the adult honeybee Apis mellifera. J. Comp. Neurol., 520(15):3509-3527.
35. Ha S et al. (2013) Somato-Dendritic Localization and Signaling by Leptin Receptors in Hypothalamic POMC and AgRP Neurons. PLoS One, 8(10):e77622.
36. Hall DH, Hartwieg E, Nguyen KCQ (2012) Modern electron microscopy methods for C. elegans. Caenorhabditis elegans: Cell Biology and Physiology.
37. Hanics, J., Barna, J., Xiao, J., Millán, J. L., Fonta, C., & Négyessy, L. (2012). Ablation of TNAP function compromises myelination and synaptogenesis in the mouse brain. Cell and Tissue Research, 349(2), 459-471.
38. Hazai D et al. (2013) Ultrastructural abnormalities in CA1 hippocampus caused by deletion of the actin regulator WAVE-1. PLoS One, 8(9):e75248.
39. Helmstaedter M & Mitra PP (2012) Computational methods and challenges for large-scale circuit mapping. Current Opinion in Neurobiology, 22(1):162–169.
40. Helmstaedter M (2013) Cellular-resolution connectomics: challenges of dense neural circuit reconstruction. Nature Methods, 10:501–507.
41. Hepburn, I., Chen, W., Wils, S., & De Schutter, E. (2012). STEPS: efficient simulation of stochastic reaction–diffusion models in realistic morphologies. BMC Systems Biology, 6(1), 36.
42. Horstmann H, Körber C, Sätzler K, Aydin D, Kuner T (2012) Serial section scanning electron microscopy (S3EM) on silicon wafers for ultra-structural volume imaging of cells and tissues. PLoS One, 7(4):e35172.
43. Houston, C. M., McGee, T. P., MacKenzie, G., Troyano-Cuturi, K., Rodriguez, P. M., Kutsarova, E., ... & Brickley, S. G. (2012). Are Extrasynaptic GABAA Receptors Important Targets for Sedative/Hypnotic Drugs?. The Journal of Neuroscience, 32(11), 3887-3897.
44. Hung, W. L., Hwang, C., Gao, S., Liao, E. H., Chitturi, J., Wang, Y., ... & Zhen, M. (2013). Attenuation of insulin signalling contributes to FSN-1-mediated regulation of synapse development. The EMBO Journal, 32(12), 1745-1760.
45. Kim JN et al. (2012) A mechanism of rat vibrissal movement based on actual morphology of the intrinsic muscle using three-dimensional reconstruction. Cells Tissues Organs, 196(6):565-9.
46. Kim JN et al. (2012) The morphology and origin of the skeletal muscle bundles associated with the human mustache. Anat Sci Int, 87(3):132-5.
47. Kittelmann M et al. (2013) Liprin-a/SYD-2 determines the size of dense projections in presynaptic active zones in C. elegans. J Cell Biol, 203(5):849-63.
48. Lauer AM et al. (2012) Efferent synapses return to inner hair cells in the aging cochlea. Neurobiology of Aging, 33(12):2892-2902.
49. Luebke, J. I., Medalla, M., Amatrudo, J. M., Weaver, C. M., Crimins, J. L., Hunt, B., ... & Peters, A. (2013). Age-Related Changes to Layer 3 Pyramidal Cells in the Rhesus Monkey Visual Cortex. Cerebral Cortex, bht336.
50. Marc RE et al. (2012) Building retinal connectomes. Current Opinion in Neurobiology, 22(4):568-574.
51. Marc, R. E., Jones, B. W., Watt, C. B., Anderson, J. R., Sigulinsky, C., & Lauritzen, S. (2013). Retinal connectomics: Towards complete, accurate networks. Progress in retinal and eye research, 37:141-162.
52. Martin KA, Spuhler IA (2013) The fine structure of the dopaminergic innervation of area 10 of macaque prefrontal cortex. Eur J Neurosci, 37(7):1061-71.
53. Matkovic, T., Siebert, M., Knoche, E., Depner, H., Mertel, S., Owald, D., ... & Sigrist, S. J. (2013). The Bruchpilot cytomatrix determines the size of the readily releasable pool of synaptic vesicles. The Journal of Cell Biology, 202(4), 667-683.
54. Medalla, M., & Barbas, H. (2012). The anterior cingulate cortex may enhance inhibition of lateral prefrontal cortex via m2 cholinergic receptors at dual synaptic sites. The Journal of Neuroscience, 32(44), 15611-15625.
55. Melo RC et al. (2013) The internal architecture of leukocyte lipid body organelles captured by three-dimensional electron microscopy tomography. PLoS One, 8(3):e59578.
56. Ming X et al. (2013) Rapid Reconstruction of 3D Neuronal Morphology from Light Microscopy Images with Augmented Rayburst Sampling. PLoS One, 8(12):e84557.
57. Mokso R, et al. (2012) X-ray mosaic nanotomography of large microorganisms. Journal of Structural Biology, 177(2):233-238.
58. Moore BC, Mathavan K, Guillette LJ (2012) Morphology and Histochemistry of Juvenile Male American Alligator (Alligator mississippiensis) Phallus. The Anatomical Record, 295(2):328-337.
59. Mustafi D et al. (2013) Photoreceptor phagocytosis is mediated by phosphoinositide signaling. FASEB J, 27(11):4585-95.
60. Negrin, A. C., Beguelini, M. R., Puga, C. C., Christante, C. M., Bueno, L. M., Morielle-Versute, E., ... & Taboga, S. R. (2013). Structure, histochemistry, ultrastructure and seasonal variations of the male prostatic complex in the black Myotis bat, Myotis nigricans (Chiroptera: Vespertilionidae). Reproduction, Fertility and Development.
61. Oliveira MP et al. (2013) Tridimensional ultrastructure and glycolipid pattern studies of Trypanosoma dionisii. Acta Trop, 128(3):548-56.
62. Ostroff, L. E., Cain, C. K., Jindal, N., Dar, N., & Ledoux, J. E. (2012). Stability of presynaptic vesicle pools and changes in synapse morphology in the amygdala following fear learning in adult rats. Journal of Comparative Neurology, 520(2), 295-314.
63. Ostroff LE et al. (2013) Synapses lacking astrocyte appear in the amygdala during consolidation of Pavlovian threat conditioning. J Comp Neurol, doi: 10.1002/cne.23523.
64. Page LR (2012) Developmental modularity and phenotypic novelty within a biphasic life cycle: morphogenesis of a cone snail venom gland. Proc. R. Soc. B., 279(1726):77-83.
65. Parajuli LK et al. (2012) Quantitative Regional and Ultrastructural Localization of the Cav2.3 Subunit of R-type Calcium Channel in Mouse Brain. The Journal of Neuroscience, 32(39):13555-67.
66. Pathan N, Stronghill P, Hasenkampf C (2013) Transmission electron microscopy and serial reconstructions reveal novel meiotic phenotypes for the ahp2 mutant of Arabidopsis thaliana. Genome, 56(3):139-45.
67. Pichon, F., Nikonenko, I., Kraftsik, R., & Welker, E. (2012). Intracortical connectivity of layer VI pyramidal neurons in the somatosensory cortex of normal and barrelless mice. European Journal of Neuroscience, 35(6), 855-869.
68. Puga, C. C., Beguelini, M. R., Negrin, A. C., Christante, C. M., Morielle-Versute, E., Vilamaior, P. S., & Taboga, S. R. (2012). Structure, histochemistry and ultrastructure of the male reproductive accessory glands in the neotropical flat-faced fruit-eating bat Artibeus planirostris (Chiroptera: Phyllostomidae). Reproduction, Fertility and Development.
69. Reichelt M, Joubert L, Perrino J, Koh AL, Phanwar I, et al. (2012) 3D Reconstruction of VZV Infected Cell Nuclei and PML Nuclear Cages by Serial Section Array Scanning Electron Microscopy and Electron Tomography. PLoS Pathog, 8(6): e1002740. doi:10.1371/journal.ppat.1002740.
70. Risco, C., & de Castro, I. F. (2013). Virus Morphogenesis in the Cell: Methods and Observations. In Structure and Physics of Viruses (pp. 417-440). Springer, Netherlands.
71. Rittié, L., Sachs, D. L., Orringer, J. S., Voorhees, J. J., & Fisher, G. J. (2012). Eccrine Sweat Glands are Major Contributors to Reepithelialization of Human Wounds. The American journal of pathology.
72. Ropireddy D, Bachus SE, Ascoli GA (2012) Non-homogeneous stereological properties of the rat hippocampus from high-resolution 3D serial reconstruction of thin histological sections. Neuroscience, 205:91-111.
73. Savost’ianov GA (2012) [The origin of elementary units of multicellularity and development of a spatial organization of cell layers]. Izv Akad Nauk Ser Biol, (2):164-74.
74. Sanz-Sanchez L, Risco C (2013) Multilamellar structures and filament bundles are found on the cell surface during bunyavirus egress. PLoS One, 8(6):e65526.
75. Scheuss, V., & Bonhoeffer, T. (2013). Function of Dendritic Spines on Hippocampal Inhibitory Neurons. Cerebral Cortex, bht171.
76. Smith, I. W., Mikesh, M., Il Lee, Y., & Thompson, W. J. (2013). Terminal Schwann Cells Participate in the Competition Underlying Neuromuscular Synapse Elimination. The Journal of Neuroscience, 33(45), 17724-17736.
77. Stogmann B et al. (2013) The architecture of Norway spruce ectomycorrhizae: three-dimensional models of cortical cells, fungal biomass, and interface for potential nutrient exchange. Mycorrhiza, 23(6):431-445.
78. Tapia JC et al. (2012) High-contrast en bloc staining of neuronal tissue for field emission scanning electron microscopy. Nature Protocols, 7:193–206.
79. Traka M et al. (2013) WDR81 is necessary for purkinje and photoreceptor cell survival. J Neurosci, 33(16):6834-44.
80. Vittori M et al. (2012) Microscopic anatomy of male tegumental glands and associated cuticular structures in Titanethes albus (Crustacea: Isopoda). Arthropod Struct Dev, 41(2):133-44.
81. Vittori M et al. (2013) Mineral deposition in bacteria-filled and bacteria-free calcium bodies in the crustacean Hyloniscus riparius (Isopoda: Oniscidea). PLoS One, 8(3):e58968.
82. Weisz CJC et al. (2012) Synaptic Transfer from Outer Hair Cells to Type II Afferent Fibers in the Rat Cochlea. The Journal of Neuroscience, 32(28):9528-9536.
83. Wolff, G., Harzsch, S., Hansson, B. S., Brown, S., & Strausfeld, N. (2012). Neuronal organization of the hemiellipsoid body of the land hermit crab, Coenobita clypeatus: correspondence with the mushroom body ground pattern. Journal of Comparative Neurology, 520(13), 2824-2846.
84. Wu, Y. F., Zhou, Y. L., Mao, W. F., Avanessian, B., Liu, P. Y., & Tang, J. B. (2012). Cellular apoptosis and proliferation in the middle and late intrasynovial tendon healing periods. The Journal of Hand Surgery, 37(2), 209-216.
85. Wu, P., Wu, X., Jiang, T. X., Elsey, R. M., Temple, B. L., Divers, S. J., ... & Chuong, C. M. (2013). Specialized stem cell niche enables repetitive renewal of alligator teeth. Proceedings of the National Academy of Sciences, 110(22), E2009-E2018.
86. Yazdabadi A et al. (2012) Miniaturized Hairs Maintain Contact with the Arrector Pili Muscle in Alopecia Areata but not in Androgenetic Alopecia: A Model for Reversible Miniaturization and Potential for Hair Regrowth. Int J Trichology, 4(3):154-7.
87. Zhai B et al. (2012) A Novel Framework of Motion Error Evaluation and Correction for Monocular Microscopic Visual System. Pattern Recognition: Communications in Computer and Information Science, 321:194-201.
88. Zhang N et al. (2013) Autosomal recessive retinitis pigmentosa E150K opsin mice exhibit photoreceptor disorganization. J Clin Invest, 123(1):121-37.
89. Zikopoulos B, Barbas H (2012) Pathways for Emotions and Attention Converge on the Thalamic Reticular Nucleus in Primates. The Journal of Neuroscience, 32(15): 5338-5350.

2002-2011

1. Adler Carolyn E., Fetter Richard D., and Bargmann Cornelia I. (2006) UNC-6/Netrin induces neuronal asymmetry and defines the site of axon formation. Nature Neuroscience, 9:511-518.
2. Albay Ricardo, Chen A., Anderson G.M., Tatevosyan M., Janusonis S. (2009) Relationships among body mass, brain size, gut length, and blood tryptophan and serotonin in young wild-type mice. BMC Physiology, 9:4.
3. Anderson JC, Kennedy H, Martin KA (2011) Pathways of attention: synaptic relationships of frontal eye field to V4, lateral intraparietal cortex, and area 46 in macaque monkey. J Neurosci., 31(30):10872-81.
4. Anderson James R., Jones Bryan W., Yang Jia-Hui, Shaw Marguerite V., Watt Carl B., Koshevoy Pavel, Spaltenstein Joel, Jurrus Elizabeth, UV Kannan, Whitaker Ross T., Mastronarde David, Tasdizen Tolga, and Marc Robert E. (2009) A Computational Framework for Ultrastructural Mapping of Neural Circuitry. PLoS Biology, 7(3):e1000074.
5. Arellano Jon I., Benavides-Piccione Ruth, DeFelipe Javier, and Yuste Rafael (2007) Ultrastructure of Dendritic Spines: Correlation Between Synaptic and Spine Morphologies. Frontiers in Neuroscience, 1(1):131-143.
6. Arellano J. I., Espinosa A., Fairén A., Yuste R., and DeFelipe J. (2007) Non-synaptic dendritic spines in neocortex. Neuroscience, 145(2):464-469.
7. Arganda-Carreras I, Fernández-González R, Muñoz-Barrutia A, Ortiz-De-Solorzano C (2010) 3D reconstruction of histological sections: Application to mammary gland tissue. Microsc Res Tech., 73(11):1019-29.
8. Bagnall MW, Hull C, Bushong EA, Ellisman MH, Scanziani M (2011) Multiple clusters of release sites formed by individual thalamic afferents onto cortical interneurons ensure reliable transmission. Neuron, 71(1):180-94.
9. Bashkatov Alexey N., Genina Elina A., Sinichkin Yuri P., Kochubey Vyacheslav I., Lakodina Nina A., and Tuchin Valery V. (2003) Glucose and Mannitol Diffusion in Human Dura Mater. Biophysical Journal, 85(5):3310-3318.
10. Biro Agota A., Holderith Noémi B., and Nusser Zoltan (2006) Release Probability-Dependent Scaling of the Postsynaptic Responses at Single Hippocampal GABAergic Synapses. The Journal of Neuroscience, 26(48):12487-12496.
11. Bishop Cory D. and Hall Brian K. (2009) Sniffing Out New Data and Hypotheses on the Form, Function, and Evolution of the Echinopluteus Post-Oral Vibratile Lobe. The Biological Bulletin, 216:307-321.
12. Bishop Derron L., Misgeld Thomas, Walsh Mark K., Gan Wen-Biao, and Lichtman Jeff W. (2004) Axon Branch Removal at Developing Synapses by Axosome Shedding. Neuron, 44(4):651-661.
13. Bito H (2010) Commentary: The chemical biology of synapses and neural circuits. Nature Chemical Biology, 6:560-563.
14. Blitzer Robert, Lombroso Paul J. (2003) Genetics of Childhood Disorders: LIII. Learning and Memory, Part 6: Induction of Long-Term Potentiation. Journal of the American Academy of Child & Adolescent Psychiatry, 42(8):998-1001.
15. Bohland Jason W., Wu Caizhi, Barbas Helen, Bokil Hemant, Bota Mihail, Breiter Hans C., Cline Hollis T., Doyle John C., Freed Peter J., Greenspan Ralph J., Haber Suzanne N., Hawrylycz Michael, Herrera Daniel G., Hilgetag Claus C., Huang Z. Josh, Jones Allan, Jones Edward G., Karten Harvey J., Kleinfeld David, Kötter Rolf, Lester Henry A., Lin John M., Mensh Brett D., Mikula Shawn, Panksepp Jaak, Price Joseph L., Safdieh Joseph, Saper Clifford B., Schiff Nicholas D., Schmahmann Jeremy D., Stillman Bruce W., Svoboda Karel, Swanson Larry W., Toga Arthur W., Van Essen David C., Watson James D., and Mitra1 Partha P. (2009) A Proposal for a Coordinated Effort for the Determination of Brainwide Neuroanatomical Connectivity in Model Organisms at a Mesoscopic Scale. PLoS Computational Biology, 5(3):e1000334.
16. Brachtel Elena F., Rusby JE, Michaelson JS, Chen LL, Muzikansky A, Smith BL, and Koerner FC (2009) Occult Nipple Involvement in Breast Cancer: Clinicopathologic Findings in 316 Consecutive Mastectomy Specimens. Journal of Clinical Oncology, 27(30):4948-4954.
17. Branco Tiago, Staras Kevin, Darcy Kevin J., and Goda Yukiko (2008) Local Dendritic Activity Sets Release Probability at Hippocampal Synapses. Neuron, 59(3):475-485.
18. Branco Tiago, Marrac Vincenzo, and Staras Kevin (2009) Examining size-strength relationships at hippocampal synapses using an ultrastructural measurement of synaptic release probability. Journal of Structural Biology.
19. Briggman Kevin L. and Denk Winfried (2006) Towards neural circuit reconstruction with volume electron microscopy techniques. Current Opinion in Neurobiology, 16(5):562-570.
20. Brooks Craig, Wei Qingqing, Cho Sung-Gyu, Dong Zheng (2009) Regulation of mitochondrial dynamics in acute kidney injury in cell culture and rodent models. The Journal of Clinical Investigation, 119(5):1275-1285.
21. Brown KM, Barrionuevo G, Canty AJ, De Paola V, Hirsch JA, Jefferis GS, Lu J, Snippe M, Sugihara I, Ascoli GA (2011) The DIADEM data sets: representative light microscopy images of neuronal morphology to advance automation of digital reconstructions. Neuroinformatics, 9(2-3):143-57.
22. Bryan Robert M., You J, Phillips SC, Andresen JJ, Lloyd EE, Rogers PA, Dryer SE, Marrelli SP (2006) Evidence for two-pore domain potassium channels in rat cerebral arteries. American Journal of Physiology - Heart and Circulatory Physiology, 291:H770-H780.
23. Budantsev A. Yu. (2009) Micromorphometric analysis of root cap cells in Allium cepa. Biology Bulletin, 36(3):242-249.
24. Catania KC, Leitch DB, Gauthier D (2011) A star in the brainstem reveals the first step of cortical magnification. PLoS One, 6(7):e22406.
25. Cerri Paulo Sergio, de Faria Flávio Paulo, Villa Ricardo Gazoni, and Katchburian Eduardo (2004) Light microscopy and computer three-dimensional reconstruction of the blood capillaries of the enamel organ of rat molar tooth germs. Journal of Anatomy, 204(3): 191–195.
26. Chklovskii D.B., Vitaladevuni S., and Scheffer L.K. (2010) Semi-automated reconstruction of neural circuits using electron microscopy. Current Opinion in Neurobiology, 20(5):667-75.
27. Chuang Chiou-Fen, VanHoven Miri K., Fetter Richard D., Verselis Vytas K., and Bargmann Cornelia I. (2007) An Innexin-Dependent Cell Network Establishes Left-Right Neuronal Asymmetry in C. elegans. Cell, 129(4):787-799.
28. Coggan JS, Grutzendler J, Bishop DL, Cook MR, Gan W, Heym J, and Lichtman JW (2004) Age-associated synapse elimination in mouse parasympathetic ganglia. Journal of Neurobiology, 60(2):214-226.
29. Coggins Michael R., Grabner Chad P., Almers Wolfhard, and Zenisek David (2007) Stimulated exocytosis of endosomes in goldfish retinal bipolar neurons. The Journal of Physiology, 584:853-865.
30. Coombes S., Bressloff P.C. (2003) Saltatory Waves in the Spike-Diffuse-Spike Model of Active Dendritic Spines. Physical Review Letters, 91(2):28102.
31. Coombes S., Doiron B., Josic K., and Shea-Brown E. (2006) Towards blueprints for network architecture, biophysical dynamics and signal transduction. Philosophical Transactions of the Royal Society, 364:3301-3318.
32. Couton Louise, Minoli Sebastian, Kiêu Kiên, Anton Sylvia, and Rospars Jean-Pierre (2009) Constancy and variability of identified glomeruli in antennal lobes: computational approach in Spodoptera littoralis. Cell and Tissue Research, 337(3):491-511.
33. Cueva Juan G., Mulholland Atticus, and Goodman Miriam B. (2007) Nanoscale Organization of the MEC-4 DEG/ENaC Sensory Mechanotransduction Channel in Caenorhabditis elegans Touch Receptor Neurons. The Journal of Neuroscience, 27(51):14089-14098.
34. da Costa Nuno Macarico and Martin Kevan A.C. (2009) Selective Targeting of the Dendrites of Corticothalamic Cells by Thalamic Afferents in Area 17 of the Cat. The Journal of Neuroscience, 29(44):13919-13928.
35. da Costa NM, Martin KA (2011) How thalamus connects to spiny stellate cells in the cat's visual cortex. J Neurosci., 31(8):2925-37.
36. Da Silva Leonard, Buck Lyndall, Simpson Peter T., Reid Lynne, McCallum Naomi, Madigan Barry J., and Lakhani Sunil R. (2009) Molecular and morphological analysis of adenoid cystic carcinoma of the breast with synchronous tubular adenosis. Virchows Archiv, 454(1):107-114.
37. Darcy KJ, Staras K, Collinson LM, Goda Y (2006) An ultrastructural readout of fluorescence recovery after photobleaching using correlative light and electron microscopy. Nature Protocols, 1:988-994.
38. Dhanrajan TM, Lynch MA, Kelly A, Popov VI, Rusakov DA, Stewart MG (2004) Expression of long-term potentiation in aged rats involves perforated synapses but dendritic spine branching results from high-frequency stimulation alone. Hippocampus, 14(2):255-264.
39. Dinnis Cameron M., Dahle Arne K., and Taylor John A. (2005) Three-dimensional analysis of eutectic grains in hypoeutectic Al–Si alloys. Materials Science and Engineering: A, 392(1-2):440-448.
40. Does MD, Parsons EC, Gore JC (2003) Oscillating gradient measurements of water diffusion in normal and globally ischemic rat brain. Magnetic Resonance in Medicine, 49(2):206-215.
41. Donohue HS, Gabbott PL, Davies HA, Rodríguez JJ, Cordero MI, Sandi C, Medvedev NI, Popov VI, Colyer FM, Peddie CJ, Stewart MG (2006) Chronic restraint stress induces changes in synapse morphology in stratum lacunosum-moleculare CA1 rat hippocampus: A stereological and three-dimensional ultrastructural study. Neuroscience, 140(2):597-606.
42. Duque Alvaro, and Zaborsky Laszlo (2006) Juxtacellular Labeling of Individual Neurons In Vivo: From Electrophysiology to Synaptology. Neuroanatomical Tract Tracing 3, 3:197-236.
43. Edwards Ian J., Dallas Mark L., Poole Sarah L., Milligan Carol J., Yanagawa Yuchio, Szabó Gábor, Erdélyi Ferenc, Deuchars Susan A., and Deuchars Jim (2007) The Neurochemically Diverse Intermedius Nucleus of the Medulla as a Source of Excitatory and Inhibitory Synaptic Input to the Nucleus Tractus Solitarii. The Journal of Neuroscience, 27(31):8324-8333.
44. Eroglu C and Barres BA (2010) Regulation of synaptic connectivity by glia. Nature, 468:223-231.
45. Ferreira LR, Dossin Fde M, Ramos TC, Freymüller E, Schenkman S (2008) Active transcription and ultrastructural changes during Trypanosoma cruzi metacyclogenesis. Anais da Academia Brasileira de Ciências, 80(1):157-166.
46. Fontana Juan, Lopez-Montero Noelia, and Risco Cristina (2007) Structural analysis of viral factories: From conventional microscopy to electron tomography. Acta Microscopica, 16(1-2):42-51.
47. Fontana Juan, Lopez-Montero Noelia (2008) The unique architecture of Bunyamwera virus factories around the Golgi complex. Cellular Microbiology, 10(10):2012-2028.
48. Francis HW, Rivas A, Lehar M, Ryugo DK (2004) Two types of afferent terminals innervate cochlear inner hair cells in C57BL/6J mice. Brain Research, 106:182-194.
49. Francis HW, Rivas A, Lehar M, Saito Y, Mouton PR, Ryugo DK (2005) Efficient quantification of afferent cochlear ultrastructure using design-based stereology. Journal of Neuroscience Methods, 150(2):150-158.
50. Frezza Christian, Cipolat Sara, de Brito Olga Martins, Micaroni Massimo, Beznoussenko Galina V., Rudka Tomasz, Bartoli Davide, Polishuck Roman S., Nika N. Danial, Bart De Strooper and Luca Scorrano (2006) OPA1 Controls Apoptotic Cristae Remodeling Independently from Mitochondrial Fusion. Cell, 126(1):177-189.
51. Friis M, Sørensen MS, Qvortrup K (2008) The Vein of the Vestibular Aqueduct With Potential Pathologic Perspectives. Otology & Neurotology, 29(1):73-78.
52. Fu Yan, Wang Haifeng, Shi Riyi, Cheng Ji-Xin (2007) Noninvasive molecular imaging of intact myelin sheath by coherent anti-Stokes Raman scattering microscopy. American Laboratory, 39(8):12-14.
53. Fuentealba Pablo, Begum Rahima (2008) Ivy Cells: A Population of Nitric-Oxide-Producing, Slow-Spiking GABAergic Neurons and Their Involvement in Hippocampal Network Activity. Neuron, 57(6):917-929.
54. Gal Jonathan S., Morozov Yury M., Ayoub Albert E., Chatterjee Mitali, Rakic Pasko, and Haydar Tarik F. (2006) Molecular and Morphological Heterogeneity of Neural Precursors in the Mouse Neocortical Proliferative Zones. The Journal of Neuroscience, 26(3):1045-1056.
55. Gao Shuying, Takemura Shin-ya, Ting Chun-Yuan, Huang Songling, Lu Zhiyuan, Luan Haojiang, Rister Jens, Thum Andreas S., Yang Meiluen, Hong Sung-Tae, Wang Jing W., Odenwald Ward F., White Benjamin H., Meinertzhagen Ian A., and Lee Chi-Hon (2008) The neural substrate of spectral preference in Drosophila. Neuron, 60:328-342.
56. Gao Xiang, Smith George M., and Chen Jinhui (2009) Impaired dendritic development and synaptic formation of postnatal-born dentate gyrus granular neurons in the absence of brain-derived neurotrophic factor signaling. Experimental Neurology, 215(1):178-190.
57. Genina É.A., Bashkatov A.N., Kochubey V.I., and Tuchin V.V. (2005) Optical clearing of human dura mater. Optics and Spectroscopy, 98(3):470-476.
58. Germuska Michael, Saha Subhash, Fiala John, and Barbas Helen (2006) Synaptic Distinction of Laminar-specific Prefrontal-temporal Pathways in Primates. Cerebral Cortex, 16(6):865-875.
59. Giampietro Costanza, Luzzati Federico, Gambarotta Giovanna, Giacobini Paolo, Boda Enrica, Fasolo Aldo, and Perroteau Isabelle (2005) Stathmin Expression Modulates Migratory Properties of GN-11 Neurons in Vitro. Endocrinology, 146(4):1825-1834.
60. Going James J. (2006) Ductal-lobar organisation of human breast tissue, its relevance in disease and a research objective: vector mapping of parenchyma in complete breasts (the Astley Cooper project). Breast Cancer Research, 8:107.
61. Going James J. and Mohun Timothy J. (2006) Human breast duct anatomy, the ‘sick lobe’ hypothesis and intraductal approaches to breast cancer. Breast Cancer Research and Treatment, 97(3): 285-291.
62. Gonzalez-Burgos Guillermo, Kroener Sven, Zaitsev Aleksey V., Povysheva Nadezhda V., Krimer Leonid S., Barrionuevo German and Lewis David A. (2007) Functional Maturation of Excitatory Synapses in Layer 3 Pyramidal Neurons during Postnatal Development of the Primate Prefrontal Cortex. Cerebral Cortex, 18(3):626-637.
63. Grill Warren M., Cantrell Meredith B., and Robertson Matthew S. (2007) Antidromic propagation of action potentials in branched axons: implications for the mechanisms of action of deep brain stimulation. Journal of Computational Neuroscience, 24(1):81-93.
64. Hamel Marie-Hélène and Poplin Cécile (2008) The Braincase Anatomy of Lawrenciella schaefferi, Actinopterygian from the Upper Carboniferous of Kansas (USA). Journal of Vertebrate Paleontology, 28(4):989-1006.
65. Hashimoto Kouichi, Ichikawa Ryoichi, Kitamura Kazuo, Watanabe Masahiko, and Kano Masanobu (2009) Translocation of a “Winner” Climbing Fiber to the Purkinje Cell Dendrite and Subsequent Elimination of “Losers” from the Soma in Developing Cerebellum. Neuron, 63(1):106-118.
66. Heilman Avram D., Quattrochi James (2004) Computational models of epileptiform activity in single neurons. Biosystems, 78(1-3):1-21.
67. Helmstaedter Moritz, Briggman Kevin L, and Denk Winfried (2009) 3D structural imaging of the brain with photons and electrons. Current Opinion in Neurobiology, 18(6):633-641.
68. Helmstaedter M, Briggman KL, Denk W (2011) High-accuracy neurite reconstruction for high-throughput neuroanatomy. Nat Neurosci, 14(8):1081-8.
69. Hitchcock Adam P., Dynes James J., Johansson Göran, Wang Jian, and Botton Gianluigi (2008) Comparison of NEXAFS microscopy and TEM-EELS for studies of soft matter. Micron, 39(6):741-748.
70. Ho Han-Chen, Wey Shiuan (2007) Three dimensional rendering of the mitochondrial sheath morphogenesis during mouse spermiogenesis. Microscopy Research and Technique, 70(8):719-723.
71. Hoffpauir Brian K. (2006) Synaptogenesis of the Calyx of Held: Rapid Onset of Function and One-to-One Morphological Innervation. The Journal of Neuroscience, 26(20):5511-5523.
72. Hoffpauir Brian K. (2007) Serial sectioning and electron microscopy of large tissue volumes for 3D analysis and reconstruction: a case study of the calyx of Held. Nature Protocols, 2:9-22.
73. Huang Bing Q., Chen Xian-Ming, LaRusso Nicholas F. (2004) Cryptosporidium parvum attachment to and internalization by human biliary epithelia in vitro: A morphologic study. Journal of Parasitology, 90(2):212:221.
74. Huber Bernhard A. (2006) Cryptic female exaggeration: The asymmetric female internal genitalia of Kaliana yuruani (Araneae: Pholcidae). Journal of Morphology, 267(6):705-712.
75. Huggett B, Tomlinson PB (2010) Aspects of Vessel Dimensions in the Aerial Roots of Epiphytic Araceae. International Journal of Plant Sciences, 171(4):362-369.
76. Jomura Sachiko, Uy Marc, Mitchell Kathy, Dallasen Renee, Bode Claudia J., and Xu Yan (2007) Potential Treatment of Cerebral Global Ischemia with Oct-4+ Umbilical Cord Matrix Cells. Stem Cells, 25(1):98-106.
77. Katz Yael, Menon Vilas, Nicholson Daniel A., Geinisman Yuri, Kath William L., and Spruston Nelson (2009) Synapse Distribution Suggests a Two-Stage Model of Dendritic Integration in CA1 Pyramidal Neurons. Neuron, 63(2):171-177.
78. Kim JN, Koh KS, Lee E, Park SC, Song WC (2011) The morphology of the rat vibrissal follicle-sinus complex revealed by three-dimensional computer-aided reconstruction. Cells Tissues Organs, 193(3):207-14.
79. Kitamura Naohito, Araya Runa, Kudoh Moeko, Kishida Haruo, Kimura Tetsuya, Murayama Miyuki, Takashima Akihiko, Sakamaki Yuriko, Hashikawa Tsutomu, Ito Shingo, Ohtsuki Sumio, Terasaki Tetsuya, Wess Jürgen, and Yamada Masahisa (2009) Beneficial Effects of Estrogen in a Mouse Model of Cerebrovascular Insufficiency. PLoS One, 4(4): e5159.
80. Kodama Takashi, Itsukaichi-Nishida Yuko, Fukazawa Yugo, Wakamori Minoru, Miyata Mariko, Molnar Elek, Mori Yasuo, Shigemoto Ryuichi, and Imoto Keiji (2006) A CaV2.1 calcium channel mutation rocker reduces the number of postsynaptic AMPA receptors in parallel fiber-Purkinje cell synapses. European Journal of Neuroscience, 24(11):2993-3007.
81. Kolomiytseva I.K., Perepelkina N.I., Patrushev I.V., and Popov V.I. (2003) Role of Lipids in the Assembly of Endoplasmic Reticulum and Dictyosomes in Neuronal Cells from the Cerebral Cortex of Yakutian Ground Squirrel (Citellus undulatus) during Hibernation. Biochemistry (Moscow), 68(7):783-794.
82. Kosaka Toshio, Kosaka Katsuko (2003) Neuronal gap junctions in the rat main olfactory bulb, with special reference to intraglomerular gap junctions. Neuroscience Research, 45(2):189-209.
83. Kosaka Toshio, Kosaka Katsuko (2004) Neuronal gap junctions between intraglomerular mitral/tufted cell dendrites in the mouse main olfactory bulb. Neuroscience Research, 49(4):373-378.
84. Kosaka T., Kosaka K. (2005) Intraglomerular dendritic link connected by gap junctions and chemical synapses in the mouse main olfactory bulb: Electron microscopic serial section analyses. Neuroscience, 131(3):611-625.
85. Kosik Kenneth S., Krichevsky Anna M. (2002) The Message and the Messenger: Delivering RNA in Neurons. Science STKE, 2002(126):pe16.
86. Kraev I.V., Godukhin O.V., Patrushev I.V., Davies H.A., Popov V.I., and Stewart M.G. (2009) Partial kindling induces neurogenesis, activates astrocytes and alters synaptic morphology in the dentate gyrus of freely moving adult rats. Neuroscience, 162(2): 254-267.
87. Krucker T., Lang A., and Meyer E.P. (2006) New polyurethane-based material for vascular corrosion casting with improved physical and imaging characteristics. Microscopy Research and Technique, 69(2):138-147.
88. Kubota Yoshiyuki, Hatada Sayuri, Kondo Satoru, Karube Fuyuki, and Kawaguchi Yasuo (2007) Neocortical Inhibitory Terminals Innervate Dendritic Spines Targeted by Thalamocortical Afferents. The Journal of Neuroscience, 27(5):1139-1150.
89. Kubota Yoshiyuki, Hatada Sayuri N., and Kawaguchi Yasuo (2009) Important Factors for the Three-Dimensional Reconstruction of Neuronal Structures from Serial Ultrathin Sections. Frontiers in Neural Circuits, 3:4.
90. Leao Ricardo M., Kushmerick Christopher, Pinaud Raphael, Renden Robert, Li Geng-Lin, Taschenberger Holger, Spirou George, Levinson S. Rock, and von Gersdorff Henrique (2005) Presynaptic Na+ Channels: Locus, Development, and Recovery from Inactivation at a High-Fidelity Synapse. The Journal of Neuroscience, 25(14):3724-3738.
91. Ledoux Veronica A., Woolley Catherine S. (2005) Evidence That Disinhibition Is Associated with a Decrease in Number of Vesicles Available for Release at Inhibitory Synapses. The Journal of Neuroscience, 25(4):971-976.
92. Lee JY, Wang X, Cui W, Sager R, Modla S, Czymmek K, Zybaliov B, van Wijk K, Zhang C, Lu H, Lakshmanan V (2011) A plasmodesmata-localized protein mediates crosstalk between cell-to-cell communication and innate immunity in Arabidopsis. Plant Cell, 23(9):3353-73.
93. Lee Karen, Avondo Jerome, Morrison Harris, Blot Lilian, Stark Margaret, Sharpe James, Bangham Andrew, and Coen Enrico (2006) Visualizing Plant Development and Gene Expression in Three Dimensions Using Optical Projection Tomography. The Plant Cell, 18(9):2145-2156.
94. Lee Kea Joo, et al. (2005) Efficient three-dimensional reconstruction of synapse with high-voltage electron microscopy. Journal of Electron Microscopy, 54(2):139-141.
95. Lee Kyung Eun, Kim Ji Hui, Jung Min Kyo, Arii Tatsuo, Ryu Jae-Sook, and Han Sung Sik (2009) Three-dimensional structure of the cytoskeleton in Trichomonas vaginalis revealed new features. Journal of Electron Microscopy, 58(5):305-313.
96. Lee P.J., Polyanskii A.A., Gurevich A., Squitieri A.A., Larbalestier D.C., Bauer P.C., Boffo C., and Edwards H.T. (2006) Grain boundary flux penetration and resistivity in large grain niobium sheet. Physica C: Superconductivity, 441(1-2):126-129.
97. Lee Seong-Gyu, Vickers Neil J., and Baker Thomas C. (2006) Glomerular Targets of Heliothis subflexa Male Olfactory Receptor Neurons Housed within Long Trichoid Sensilla. Chemical Senses, 31(9):821-834.
98. Leung Ivan Y.-F., Sandstrom Marita M., Zucker Charles L., Neuringer Martha, and Snodderly D. Max (2004) Nutritional manipulation of primate retinas. II. Effects of Age, n–3 Fatty Acids, Lutein, and Zeaxanthin on Retinal Pigment Epithelium. Investigative Ophthalmology and Visual Science. 45:3244-3256.
99. Leung Ivan Y.-F., Sandstrom Marita M., Zucker Charles L., Neuringer Martha, and Snodderly D. Max (2005) Nutritional manipulation of primate retinas. IV. Effects of n-3 fatty acids, lutein, and zeaxanthin on S-cones and rods in the foveal region. Experimental Eye Research, 81(5):513-529.
100. Li J, Wang Y, Chiu SL, Cline HT. (2010) Membrane targeted horseradish peroxidase as a marker for correlative fluorescence and electron microscopy studies. Front Neural Circuits, 4:6.
101. Li J, Erisir A, Cline H. (2011) In vivo time-lapse imaging and serial section electron microscopy reveal developmental synaptic rearrangements. Neuron, 69(2):273-86.
102. Liu Dennis (2006) WWW: Neuroscience Web Sites. CBE - Life Sciences Education, 5(2): 94-98.
103. Liu Xiao-Bo, Low Lawrence K., Jones Edward G., and Cheng Hwai-Jong (2005) Stereotyped Axon Pruning via Plexin Signaling Is Associated with Synaptic Complex Elimination in the Hippocampus. The Journal of Neuroscience, 25(40):9124-9134.
104. Livet Jean, Weissman Tamily A., Kang Hyuno, Draft Ryan W., Lu Ju, Bennis Robyn A., Sanes Joshua R., and Lichtman Jeff W. (2007) Transgenic strategies for combinatorial expression of fluorescent proteins in the nervous system. Nature, 450:56-62.
105. Lu Ju, Tapia Juan Carlos, White Olivia L., Lichtman Jeff W. (2009) The Interscutularis Muscle Connectome. PLoS Biology, 7(2):e1000032.
106. Lu J (2011) Neuronal tracing for connectomic studies. Neuroinformatics, 9(2-3):159-66.
107. Lushnikova Irina, Skibo Galina, Muller Dominique, and Nikonenko Irina (2009) Synaptic potentiation induces increased glial coverage of excitatory synapses in CA1 hippocampus. Hippocampus, 19(8):753-762.
108. Luzzati Federico, De Marchis Silvia, Fasolo Aldo, and Peretto Paolo (2006) Neurogenesis in the Caudate Nucleus of the Adult Rabbit. The Journal of Neuroscience, 26(2):609-621.
109. Luzzati F, Fasolo A, Peretto P (2011) Combining confocal laser scanning microscopy with serial section reconstruction in the study of adult neurogenesis. Front Neurosci, 5:70.
110. Luzzati Federico, Bonfanti Luca, Fasolo Aldo, and Peretto Paolo (2009) DCX and PSA-NCAM Expression Identifies a Population of Neurons Preferentially Distributed in Associative Areas of Different Pallial Derivatives and Vertebrate Species. Cerebral Cortex, 19(5):1028-1041.
111. Ma Bin, Wang Lei, von Wasielewski Reinhard, Lindenmaier Werner, and Dittmar Kurt E.J. (2008) Serial sectioning and three-dimensional reconstruction of mouse Peyer's patch. Micron, 39(7):967-975.
112. Mathiisen Thomas Misje, Lehre Knut Petter, Danbolt Niels Christian, Ottersen Ole Petter (2010) The perivascular astroglial sheath provides a complete covering of the brain microvessels: An electron microscopic 3D reconstruction. Glia, 58(9):1094-1103.
113. Medalla M. and Barbas H. (2006) Diversity of laminar connections linking periarcuate and lateral intraparietal areas depends on cortical structure. European Journal of Neuroscience, Vol. 23: 161–179.
114. Medalla M., Lera P., Feinberg M., and Barbas H. (2007) Specificity in Inhibitory Systems Associated with Prefrontal Pathways to Temporal Cortex in Primates. Cerebral Cortex, 17(Supplement 1):i136-i150.
115. Medvedev Nikolay I., Rodríguez-Arellano José J., Popov Victor I., Davies Heather A., Tigaret Cezar M., Schoepfer Ralf, and Stewart Michael G. (2008) The glutamate receptor 2 subunit controls post-synaptic density complexity and spine shape in the dentate gyrus. European Journal of Neuroscience, 27(2):315-325.
116. Meek J., Kirchberg G., Grant K., von der Emde G. (2004) Dye coupling without gap junctions suggests excitatory connections of g-aminobutyric acidergic neurons. The Journal of Comparative Neurology, 468:151-164.
117. Merchan-Perez Angel, Rodriguez José-Rodrigo, Alonso-Nanclares Lidia, Schertel Andreas, and DeFelipe Javier (2009) Counting synapses using FIB/SEM microscopy: a true revolution for ultrastructural volume reconstruction. Frontiers in Neuroanatomy, 3(18):1-14.
118. Merchan-Perez Angel, Rodriguez José-Rodrigo, Ribak Charles E., and DeFelipe Javier (2009) Proximity of excitatory and inhibitory axon terminals adjacent to pyramidal cell bodies provides a putative basis for nonsynaptic interactions. Proceedings of the National Academy of Sciences, 106(24):9878-9883.
119. Meunier Claude, d'Incamps Boris Lamotte (2008) Extending Cable Theory to Heterogeneous Dendrites. Neural Computation, 20(7): 1732-1775.
120. Meyer-Luehmann Melanie, Spires-Jones Tara L., Prada Claudia, Garcia-Alloza Monica, de Calignon Alix, Rozkalne Anete, Koenigsknecht-Talboo Jessica, Holtzman David M., Bacskai Brian J., and Hyman Bradley T. (2008) Rapid appearance and local toxicity of amyloid-beta plaques in a mouse model of Alzheimer’s disease. Nature, 451(7):720-724.
121. Miranda R., Sebrie C., Degrouard J., Gillet B., Jaillard D., Laroche S., and Vaillend C. (2009) Reorganization of Inhibitory Synapses and Increased PSD Length of Perforated Excitatory Synapses in Hippocampal Area CA1 of Dystrophin-Deficient mdx Mice. Cerebral Cortex, 19(4):876-888.
122. Morales J, Alonso-Nanclares L, Rodríguez JR, Defelipe J, Rodríguez A, Merchán-Pérez A (2011) Espina: a tool for the automated segmentation and counting of synapses in large stacks of electron microscopy images. Front Neuroanat, 5:18.
123. Morales J, Alonso-Nanclares L, Rodriguez J-R, Merchan-Perez A, DeFelipe J, Rodriguez A (2011) Fast interactive quantification of synapses in the cerebral cortex. Int J Artif Intell Tools, 20(2):239-252.
124. Morozov Yury M. (2006) Translocation of Synaptically Connected Interneurons across the Dentate Gyrus of the Early Postnatal Rat Hippocampus. The Journal of Neuroscience, 26(19):5017-5027.
125. Mosaliganti Kishore, Janoos Firdaus, Irfanoglu Okan, Ridgway Randall, Machiraju Raghu, Huang Kun, Saltz Joel, Leone Gustavo, and Ostrowski Michael (2008) Tensor classification of N-point correlation function features for histology tissue segmentation. Medical Image Analysis, 13(1):156-166.
126. Mustafi D, Kevany BM, Genoud C, Okano K, Cideciyan AV, Sumaroka A, Roman AJ, Jacobson SG, Engel A, Adams MD, Palczewski K (2011) Defective photoreceptor phagocytosis in a mouse model of enhanced S-cone syndrome causes progressive retinal degeneration. FASEB J., 25(9):3157-76.
127. Negyessy Laszlo, Bergson Clare, Garab Sándor, Simon László, and Goldman-Rakic Patricia S. (2008) Ultrastructural localization of calcyon in the primate cortico-basal ganglia-thalamocortical loop. Neuroscience Letters, 440(1):59-62.
128. Nicholson Daniel A., Geinisman Yuri (2008) Axospinous synaptic subtype-specific differences in structure, size, ionotropic receptor expression, and connectivity in apical dendritic regions of rat hippocampal CA1 pyramidal neurons. Journal of Comparative Neurology, 512(3):399-418.
129. Nikonenko Irina, Jourdain Pascal, and Muller Dominique (2003) Presynaptic remodeling contributes to activity-dependent synaptogenesis. The Journal of Neuroscience, 23(24):8498-8505.
130. Nikonenko Irina, Boda Bernadett, Steen Sylvain, Knott Graham, Welker Egbert, and Muller Dominique (2008) PSD-95 promotes synaptogenesis and multiinnervated spine formation through nitric oxide signaling. The Journal of Cell Biology, 183(6):1115-1127.
131. Nimchinsky Esther A., Sabatini Bernardo L., and Svoboda Karel (2002) Structure and function of dendritic spines. Annual Review of Physiology, 64:313-353.
132. Nishida Hideko, Okabe Shigeo (2007) Direct Astrocytic Contacts Regulate Local Maturation of Dendritic Spines. Journal of Neuroscience, 27(2):331-340.
133. Nuntagij Paworn, Oddo Salvatore, LaFerla Frank M., Kotchabhakdi Naiphinich, Ottersen Ole P., Torp Reidun (2009) Amyloid Deposits Show Complexity and Intimate Spatial Relationship with Dendrosomatic Plasma Membranes: An Electron Microscopic 3D Reconstruction Analysis in 3xTg-AD Mice and Aged Canines. Journal of Alzheimer’s Disease, 16(2):315-323.
134. Ohno N, Kidd GJ, Mahad D, Kiryu-Seo S, Avishai A, Komuro H, Trapp BD (2011) Myelination and axonal electrical activity modulate the distribution and motility of mitochondria at CNS nodes of Ranvier. J Neurosci., 31(20):7249-58.
135. Ou Yimiao, Chwalla Barbara, Landgraf Matthias, and van Meyel Donald J. (2008) Identification of genes influencing dendrite morphogenesis in developing peripheral sensory and central motor neurons. Neural Development, 3:16.
136. Ovtscharoff W., Riedel A., Kubisch C., Stoyanov S., Helmeke C., Herzog A., Michaelis B., and Braun K. (2007) 3D-Brain Model Software: A New Interactive Real-Time Graphics Visualization for Rat Brain. Bildverarbeitung für die Medizin 2007, 348-352.
137. Pangestiningsih Tri Wahyu, Hendrickson Anita, Sigit Koeswinarning, Sajuthi Dondin, Nurhidayat, and Bowden Douglas M. (2009) Development of the area postrema: An immunohistochemical study in the macaque. Brain Research, 1280:23-32.
138. Parke J. L., Oh E., Voelker S., Hansen E. M., Buckles G., and Lachenbruch B. (2007) Phytophthora ramorum Colonizes Tanoak Xylem and Is Associated with Reduced Stem Water Transport. Phytopathology, 97(12):1558-1567.
139. Patel Leena S., Wenzel H. Jürgen, and Schwartzkroin Philip A. (2004) Physiological and Morphological Characterization of Dentate Granule Cells in the p35 Knock-Out Mouse Hippocampus: Evidence for an Epileptic Circuit. The Journal of Neuroscience, 24(41):9005-9014.
140. Pereira Alfredo, Lungarzo Carlos (2005) A framework for the computational approach to cellular metabolism supporting neuronal activity. International Journal of Computational Cognition, 3(3):88-93.
141. Pereira Alfredo (2007) Astrocyte-trapped calcium ions: the hypothesis of a quantum-like conscious protectorate. Quantum Biosystems, 2:80-92.
142. Pereira Jose E., Costa Luís M., Cabrita António M., Couto Pedro A., Filipe Vítor M., Magalhães Luís G., Fornaro Michele, Di Scipio Federica, Geuna Stefano, Maurício Ana C., and Varejão Artur S.P. (2009) Methylprednisolone fails to improve functional and histological outcome following spinal cord injury in rats. Experimental Neurology, 220(1):71-81.
143. Peychl J., Husak J., Spring H., Cervinka M., and Rudolf E. (2002) 3D-computer based reconstructions of apoptotic nuclei. Frontiers in Bioscience, 7:f8-9.
144. Popov V.I., Davies H.A., Rogachevsky V.V., Patrushev I.V., Errington M.L., Gabbott P.L.A., Bliss T.V.P., and Stewart M.G. (2004) Remodelling of synaptic morphology but unchanged synaptic density during late phase long-term potentiation (LTP): A serial section electron micrograph study in the dentate gyrus in the anaesthetised rat. Neuroscience, 128(2):251-262.
145. Popov Victor, Medvedev Nikolai I., Davies Heather A., Stewart Michael G. (2005) Mitochondria form a filamentous reticular network in hippocampal dendrites but are present as discrete bodies in axons: A three-dimensional ultrastructural study. The Journal of Comparative Neurology, 492(1):50-65.
146. Popov V.I., Medvedev N.I., Patrushev I.V., Ignat’ev D.A., Morenkov E.D., and Stewart M.G. (2007) Reversible reduction in dendritic spines in CA1 of rat and ground squirrel subjected to hypothermia–normothermia in vivo: A three-dimensional electron microscope study. Neuroscience, 149(3):549-560.
147. Popov V.I., Medvedev Nikolay I., Kraev Igor V., Gabbott Paul L., Davies Heather A., Lynch Marina, Cowley Thelma R., Berezin Vladimir, Bock Elisabeth, and Stewart Michael G. (2008) A cell adhesion molecule mimetic, FGL peptide, induces alterations in synapse and dendritic spine structure in the dentate gyrus of aged rats: a three-dimensional ultrastructural study. European Journal of Neuroscience, 27(2):301-314.
148. Popov Victor I., Stewart Michael G. (2009) Complexity of contacts between synaptic boutons and dendritic spines in adult rat hippocampus: Three-dimensional reconstructions from serial ultrathin sections in vivo. Synapse, 63(5):369-377.
149. Prodanov Dimiter, Thil Marie-Anne, Marani Enrico, Delbeke Jean, Holsheimer Jan (2005) Three-dimensional topography of the motor endplates of the rat gastrocnemius muscle. Muscle & Nerve, 32(3):292-302.
150. Quesada R, Triana E, Vargas G, Douglass JK, Seid MA, Niven JE, Eberhard WG, Wcislo WT (2011) The allometry of CNS size and consequences of miniaturization in orb-weaving and cleptoparasitic spiders. Arthropod Struct Dev., 40(6):521-9.
151. Robert EM, Schmitz N, Boeren I, Driessens T, Herremans K, De Mey J, Van de Casteele E, Beeckman H, Koedam N (2011) Successive cambia: a developmental oddity or an adaptive structure? PLoS One, 6(1):e16558.
152. Romorini Stefano, Piccoli Giovanni, and Sala Carlo (2006) Regulation of Dendritic Spine Morphology and Synaptic Function by Scaffolding Proteins. Molecular Mechanisms of Synaptogenesis, 261-276.
153. Ropireddy D, Ascoli GA (2011) Potential Synaptic Connectivity of Different Neurons onto Pyramidal Cells in a 3D Reconstruction of the Rat Hippocampus. Front Neuroinform., 5:5.
154. Rusby Jennifer E., Brachtel Elena F., Michaelson James S., Koerner Frederick C., and Smith Barbara L. (2007) Breast duct anatomy in the human nipple: three-dimensional patterns and clinical implications. Breast Cancer Research and Treatment, 106(2):171-179.
155. Rusby Jennifer E., Brachtel E., Taghian A., Michaelson J., Koerner F., Smith B. (2007) Microscopic anatomy within the nipple: implications for nipple-sparing mastectomy. The American Journal of Surgery, 194(4):433-437.
156. Sandi C., Davies H. A., Cordero M. I., Rodriguez J. J., Popov V. I., and Stewart M. G. (2003) Rapid reversal of stress induced loss of synapses in CA3 of rat hippocampus following water maze training. European Journal of Neuroscience, 17(11):2447-2456.
157. Schuettauf Frank, Rejdak Robert, Walski Michal, Frontczak-Baniewicz Malgorzata, Voelker Michael, Blatsios Georgios, Shinoda Kei, Zagorski Zbigniew, Zrenner Eberhart, and Grieb Pawel (2004) Retinal neurodegeneration in the DBA/2J mouse—a model for ocular hypertension. Acta Neuropathologica, 107(4):352-358.
158. Segev Idan, London Michael (2000) Untangling Dendrites with Quantitative Models. Science, 290(5492):744-750.
159. Seid MA, Castillo A, Wcislo WT (2011) The allometry of brain miniaturization in ants. Brain Behav Evol., 77(1):5-13.
160. Shepherd Gordon M.G., Raastad Morten, and Andersen Per (2002) General and variable features of varicosity spacing along unmyelinated axons in the hippocampus and cerebellum. Proceedings of the National Academy of Sciences, 99(9):6340-6345.
161. Siskova Zuzana, Page Anton, O’Connor Vincent, and Perry Victor Hugh (2009) Degenerating Synaptic Boutons in Prion Disease: Microglia Activation without Synaptic Stripping. American Journal of Pathology, 175:1610-1621.
162. Smith AR, Seid MA, Jiménez LC, Wcislo WT (2010) Socially induced brain development in a facultatively eusocial sweat bee Megalopta genalis (Halictidae). Proc Biol Sci., 277(1691):2157-63.
163. Smith Stephen J. (2007) Circuit reconstruction tools today. Current Opinion in Neurobiology, 17(5):601-608.
164. Song Jae W., Misgeld Thomas, Kang Hyuno, Knecht Sharm, Lu Ju, Cao Yi, Cotman Susan L., Bishop Derron L., and Lichtman Jeff W. (2008) Lysosomal Activity Associated with Developmental Axon Pruning. The Journal of Neuroscience, 28(36):8993-9001.
165. Song Wu-Chul, Hu Kyung-Seok, and Koh Ki-Seok (2005) Multiunit arrector pili muscular structure as a variation observed by using computer-based three-dimensional reconstruction. Cell and Tissue Research, 322(2):335-337.
166. Song Wu-Chul, Hwang Weon-Jung, Shin Chuog, and Koh Ki-Seok (2006) A new model for the morphology of the arrector pili muscle in the follicular unit based on three-dimensional reconstruction. Journal of Anatomy, 208(5): 643-648.
167. Song W.-C., Hu K-S., Kim H-J., and Koh K-S. (2007) A study of the secretion mechanism of the sebaceous gland using three-dimensional reconstruction to examine the morphological relationship between the sebaceous gland and the arrector pili muscle in the follicular unit. British Journal of Dermatology, 157(2):325-330.
168. Song Wu-Chul, Jo Dong-In, Lee Jeong-Yong, Kim Jeong-Nam, Hur Mi-Sun, Hu Kyung-Seok, Kim Hee-Jin, Shin Chuog, and Koh Ki-Seok (2009) Microanatomy of the incisive canal using three-dimensional reconstruction of microCT images: An ex vivo study. Oral Surgery, Oral Medicine, Oral Pathology, Oral Radiology, and Endodontology, 108(4):583-590.
169. Spires Tara L., Meyer-Luehmann Melanie, Stern Edward A., McLean Pamela J., Skoch Jesse, Nguyen Paul T., Bacskai Brian J., and Hyman Bradley T. (2005) Dendritic Spine Abnormalities in Amyloid Precursor Protein Transgenic Mice Demonstrated by Gene Transfer and Intravital Multiphoton Microscopy. Journal of Neuroscience, 25(31):7278-7287.
170. Srinivasan Ranga, Zhou Xiaobo, Miller Eric, Lu Ju, Lichtman Jeff, and Wong Stephen T.C. (2007) Automated Axon Tracking of 3D Confocal Laser Scanning Microscopy Images Using Guided Probabilistic Region Merging. Neuroinformatics, 5(3):189-203.
171. Stamataki Sofia, Francis Howard W., Lehara Mohamed, Maya Bradford J., and Ryugo David K. (2006) Synaptic alterations at inner hair cells precede spiral ganglion cell loss in aging C57BL/6J mice. Hearing Research, 221(1-2):104-118.
172. Stevens Beth (2008) Neuron-Astrocyte Signaling in the Development and Plasticity of Neural Circuits. Neuro-Signals, 16:278-288.
173. Stewart M.G., Davies H.A., Sandi C., Kraev I.V., Rogachevsky V.V., Peddie C.J., Rodriguez J.J., Cordero M.I., Donohue H.S., Gabbott P.L.A., and Popov V.I. (2004) Stress suppresses and learning induces plasticity in CA3 of rat hippocampus: A three-dimensional ultrastructural study of thorny excrescences and their postsynaptic densities. Neuroscience, 131(1):43-54.
174. Stewart M.G., Medvedev N.I., Popov V.I., Schoepfer R., Davies H.A., Murphy K., Dallérac G.M., Kraev I.V., and Rodríguez J.J. (2005) Chemically induced long-term potentiation increases the number of perforated and complex postsynaptic densities but does not alter dendritic spine volume in CA1 of adult mouse hippocampal slices. European Journal of Neuroscience, 21(12):3368-3378.
175. Stranahan Alexis M., Khalil David, and Gould Elizabeth (2007) Running induces widespread structural alterations in the hippocampus and entorhinal cortex. Hippocampus, 17(11):1017-1022.
176. Stranahan Alexis M., Lee Kim, Martin Bronwen, Maudsley Stuart, Golden Erin, Cutler Roy G., and Mattson Mark P. (2009) Voluntary exercise and caloric restriction enhance hippocampal dendritic spine density and BDNF levels in diabetic mice. Hippocampus, 19(10):951-61..
177. Stutzmann Grace E. (2007) The Pathogenesis of Alzheimers Disease—Is It a Lifelong "Calciumopathy"? The Neuroscientist, 13(5):546-559.
178. Takemura Shin-ya, Lu Zhiyuan, and Meinertzhagen Ian A. (2008) Synaptic circuits of the Drosophila optic lobe: The input terminals to the medulla. The Comparative Journal of Neurology, 509:493-513.
179. Tamas Gabor and Szabadics Janos (2004) Summation of Unitary IPSPs Elicited by Identified Axo-axonic Interneurons. Cerebral Cortex, 14:823-826.
180. Tanaka Jun-ichi, Matsuzaki Masanori, Tarusawa Etsuko, Momiyama Akiko, Molnar Elek, Kasai Haruo, and Shigemoto Ryuichi (2005) Number and Density of AMPA Receptors in Single Synapses in Immature Cerebellum. The Journal of Neuroscience, 25(4):799-807.
181. Telgkamp Petra, Padgett Daniel E., Ledoux Veronica A., Woolley Catherine S., and Raman Indira M. (2004) Maintenance of high-frequency transmission at Purkinje to cerebellar nuclear synapses by spillover from boutons with multiple release sites. Neuron, 41(1):113-126.
182. Thompson Scott M. (2003) Ephrins keep dendritic spines in shape. Nature Neuroscience, 6:103-104.
183. Toni Nicholas, Teng E. Matthew, Bushong Eric A., Aimone James B., Zhao Chunmei, Consiglio Antonella, van Praag Henriette, Martone Maryann E., Ellisman Mark H., and Gage Fred H. (2007) Synapse formation on neurons born in the adult hippocampus. Nature Neuroscience, 10:727-734.
184. Toni Nicholas, Laplagne Diego A., Zhao Chunmei, Lombardi Gabriela, Ribak Charles E., Gage Fred H., and Schinder Alejandro F. (2008) Neurons born in the adult dentate gyrus form functional synapses with target cells. Nature Neuroscience, 11: 901-907.
185. Tukhovskaya Elena A., Yukin Alexey Yu., Khokhlova Oksana N., Murashev Arkady N., and Vitek Michael P. (2008) COG1410, a novel apolipoprotein-E mimetic, improves functional and morphological recovery in a rat model of focal brain ischemia. Journal of Neuroscience Research, 87(3):677-682.
186. Turaga SC, Murray JF, Jain V, Roth F, Helmstaedter M, Briggman K, Denk W, Seung HS (2010) Convolutional networks can learn to generate affinity graphs for image segmentation. Neural Comput, 22(2):511-38.
187. Uchigashima M, Yamazaki M, Yamasaki M, Tanimura A, Sakimura K, Kano M, Watanabe M (2011) Molecular and morphological configuration for 2-arachidonoylglycerol-mediated retrograde signaling at mossy cell-granule cell synapses in the dentate gyrus. J Neurosci., 31(21):7700-14.
188. Valentine William M., Abel Ty W., Hill Kristina E., Austin Lori M., Burk Raymond F. (2008) Neurodegeneration in Mice Resulting From Loss of Functional Selenoprotein P or Its Receptor Apolipoprotein E Receptor 2. Journal of Neuropathology and Experimental Neurology, 67(1):68-77.
189. van Wijk Michiel, Wadman Wytse J., and Sabelis Maurice W. (2006) Morphology of the olfactory system in the predatory mite Phytoseiulus Persimilis. Experimental and Applied Acarology, 40(3-4):217-229.
190. Vasilkoski Zlatko and Stepanyants Armen (2009) Detection of the optimal neuron traces in confocal microscopy images. Journal of Neuroscience Methods, 178(1): 197-204.
191. Vu Nhat and Manjunath B.S. (2008) Graph Cut Segmentation of Neuronal Structures from Transmission Electron Micrographs. Proc IEEE International Conference on Image Processing.
192. Wang Y, Narayanaswamy A, Tsai CL, Roysam B (2011) A broadly applicable 3-D neuron tracing method based on open-curve snake. Neuroinformatics, 9(2-3):193-217.
193. Whitfield J.F. (2004) The neuronal primary cilium—an extrasynaptic signaling device. Cellular Signalling, 16(7):763-767.
194. Willhite David C., Nguyen Katherine T., Masurkar Arjun V., Greer Charles A., Shepherd Gordon M., and Chen Wei R. (2006) Viral tracing identifies distributed columnar organization in the olfactory bulb. Proceedings of the National Academy of Sciences, 103(33):12592-12597.
195. Witte K, Schuh AL, Hegermann J, Sarkeshik A, Mayers JR, Schwarze K, Yates JR 3rd, Eimer S, Audhya A (2011) TFG-1 function in protein secretion and oncogenesis. Nat Cell Biol., 13(5):550-8.
196. Wong Jason, Bennett William, Ferguson Mark W.J., and McGrouther Duncan A. (2006) Microscopic and histological examination of the mouse hindpaw digit and flexor tendon arrangement with 3D reconstruction. Journal of Anatomy, 209(4):533–545.
197. Wong Jason K.F., Lui Y.H., Kapacee Z., Kadler K.E., Ferguson M.W., McGrouther D.A. (2009) The Cellular Biology of Flexor Tendon Adhesion Formation. American Journal of Pathology, 175:1938-1951.
198. Wu Chuanshen, Chang Ansi, Smith Maria C., Won Roy, Yin Xinghua, Staugaitis Susan M., Agamanolis Dimitri, Kidd Grahame J., Miller Robert H., and Trapp Bruce D. (2009) ß4 Tubulin Identifies a Primitive Cell Source for Oligodendrocytes in the Mammalian Brain. The Journal of Neuroscience, 29(24):7649-7657.
199. Xiao D., Zikopoulos B., and Barbas H. (2009) Laminar and modular organization of prefrontal projections to multiple thalamic nuclei. Neuroscience, 161(4): 1067-1081.
200. Xu-Friedman Matthew A. and Regehr Wade G. (2003) Ultrastructural Contributions to Desensitization at Cerebellar Mossy Fiber to Granule Cell Synapses. The Journal of Neuroscience, 23(6):2182-2192.
201. Yankova Maya, Hart Sharron A., and Woolley Catherine S. (2000) Estrogen increases synaptic connectivity between single presynaptic inputs and multiple postsynaptic CA1 pyramidal cells: A serial electron-microscopic study. Proceedings of the National Academy of Sciences, 98(6): 3525-3530.
202. Yang G., Gong Y.D., Gong K., Jiang W.L., Kwon E., Wang P., Zheng H., Zhang X.F., Gan W.B., and Zhao N.M. (2005) Reduced synaptic vesicle density and active zone size in mice lacking amyloid precursor protein (APP) and APP-like protein 2. Neuroscience Letters, 384(1-2):66-71.
203. Yang J, Lunde LK, Nuntagij P, Oguchi T, Camassa LM, Nilsson LN, Lannfelt L, Xu Y, Amiry-Moghaddam M, Ottersen OP, Torp R. (2011) Loss of astrocyte polarization in the tg-ArcSwe mouse model of Alzheimer's disease. J Alzheimers Dis., 27(4):711-22.
204. Yasuyama K., Meinertzhagen I.A., and Schürmann F.W. (2003) Synaptic connections of cholinergic antennal lobe relay neurons innervating the lateral horn neuropile in the brain of Drosophila melanogaster. The Journal of Comparative Neurology, 466(3):299-315.
205. Yue Zhicao, Jiang Ting-Xin, Widelitz Randall Bruce, and Chuong Cheng-Ming (2005) Mapping stem cell activities in the feather follicle. Nature, 438:1026-1029.
206. Zhang Huaizhong, Rodriguez E. Patricia, Morrow Philip, McClean Sally, and Saetzler Kurt (2009) MCMC-Based Algorithm to Adjust Scale Bias in Large Series of Electron Microscopical Ultrathin Sections. Computer Analysis of Images and Patterns, 557-564.
207. Zhao Chunmei, Teng E. Matthew, Summers, Jr, Robert G., Ming Guo-li, and Gage Fred H. (2006) Distinct Morphological Stages of Dentate Granule Neuron Maturation in the Adult Mouse Hippocampus. The Journal of Neuroscience, 26(1):3-11.
208. Zhou Lei, Martinez Sarah J., Haber Michael, Jones Emma V., Bouvier David, Doucet Guy, Corera Amadou T., Fon Edward A., Zisch Andreas H., and Murai Keith K. (2007) EphA4 Signaling Regulates Phospholipase C 1 Activation, Cofilin Membrane Association, and Dendritic Spine Morphology. The Journal of Neuroscience, 27(19):5127-5138.
209. Zikopoulos Basilis and Barbas Helen (2006) Prefrontal Projections to the Thalamic Reticular Nucleus form a Unique Circuit for Attentional Mechanisms. The Journal of Neuroscience, 26(28):7348-7361.
210. Zikopoulos Basilis and Barbas Helen (2007) Parallel Driving and Modulatory Pathways Link the Prefrontal Cortex and Thalamus. PLoS ONE, 2(9):e848.

Books

1. Adams Paige J., Robinson Rachel A., and Dudek Serena M. (2008) Role of Action Potentials in Regulating Gene Transcription: Relevance to LTP. Transcriptional Regulation by Neuronal Activity.
2. Czech J., Dittrich M., and Stiles J.R. (2009) Rapid Creation, Monte Carlo Simulation, and Visualization of Realistic 3D Cell Models. Systems Biology.
3. Dauguet J., Bock D., Reid R.C., Warfield S.K. (2007) Alignment of Large Image Series Using Cubic B-Splines Tessellation: Application to Transmission Electron Microscopy Data. Medical Image Computing and Computer-Assisted Intervention, 710-717.
4. Eroglu Cagla, Barres Ben A., and Stevens Beth (2008) Glia as Active Participants in the Development and Function of Synapses. Structural and Functional Organization of the Synapse.
5. Schoonover, C. Portraits of the Mind: Visualizing the Brain from Antiquity to the 21st Century, 1st edition (2010). Harry N. Abrams.
6. Ting Jonathan T. and Phillips Paul E.M. (2008) Neurotransmitter: Release. Wiley Encyclopedia of Chemical Biology.

Textbooks

1. Biology, 2nd Edition (2010). Edited by Robert Brooker, Eric Widmaier, Linda Graham, and Peter Stiling. McGraw-Hill.
2. Cells of the Nervous System (2005). Jennifer Morgan and Ona Bloom. Chelsea House Publications.
3. Encyclopedia of Molecular Cell Biology and Molecular Medicine, 2nd Edition (2005). Edited by Robert A. Meyers, Vol. 9, pp. 139-165. Wiley-VCH.
4. Essential Cell Biology, 3rd edition (2013). Edited by Bruce Alberts, Dennis Bray, etc. Russian edition, published by BKL Publishers (Moscow, Russia).
5. Fundamental Neuroscience, 3rd Edition (2008). Edited by Larry Squire, Darwin Berg, Floyd Bloom, Sascha du Lac, Anirvan Ghosh, and Nicholas Spitzer. Elsevier.
6. Neuroscience in the 21st Century, 1st edition (2013). Edited by Donald W. Pfaff. Springer.
7. Neurosciencias (2013). Edited by Ana Cristina Rego, Catarina R. Olivieira, and Carlos B. Duarte. LIDEL Press, Portugal.
8. The Hippocampus Book (2006). Edited by Per Andersen, Richard Morris, David Amaral, and Tim Bliss. Oxford University Press.
9. The Neurobiology of Learning and Memory, 3rd Edition (2020). Jerry W. Rudy. Sinauer Associates, Inc.

Websites

1. Science, Signal Transduction NetWatch
2. Society for Neuroinformatics in Neuropsychology
3. Neuroscience for Kids "Page of the Month"
4. CNDP (French Ministry of National Education)